Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01995 ATGGCCATGGGAATGGAACGAGTGCAGTGTAGCTATGGCTGTCTGGACGAAACGTTCGAAATTAGGAAAGAGATGTTTCACGGCCAACAGTACAGCCATATTTACTTCGCACGCCTTCATTTGATGCGAACTCTGTTGTATTCTCTCGTTCCTCATTGGAAACCTAATTTTCCCGTGTGCACGGTGCTGGAATTGGAAGAGGACAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAACCTTGTATACTTGACGAGTATTCTAAGCAGAAATCAGCAGTTCCACTTGTCAAGCCACATAACTTCATGCACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGAGTTAAGCTCAGTGGAAATATCATTCCGCCCTCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAAGTGGGGCAGGTGACTTTTTGGTTCAGGATGTACTGGATGCTGGCTTACCCCCACAGATAGAATTTCCTCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAGGGTTGGGAGCAGCACCTCTAATCCTCTTCAATTTCAGCTTCTCCTTGATCATATCACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCGTCAAAAATTGTTCAAGTTGTCTTTGCTGGAAATCTAGTTGAGATACCTCAGAGACTTCTTAACGGACAGAATTTGGCTTCAAAGGATCTTGCAATAATGTCTGAGCCAATAAGGGAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTATGCCTTTGGATATCATGCCAGGACACAGTGACCCTGCTAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCTTCTGCATATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTATTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAATATTCGGATGCAAAAGATAAACTTGAATTTATGGAAAGGACATTAAGGTGGAGGCATTTAGCACCCACTACACCTAATACTCTTGGGTGCTTTCCTTATACTGAGAGGGATCCTTTCTTCATTGAGAGCTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGGATCATAAAGGGATCAGAAGGGCAGTTAGTGAGACTAATATGTGTTCCTAAATTCAGTGAAACTGGAATTGCTGTTATGGTGAGCTCCAAATCTCGCAGTCTTCATTTTAACTTAGATATGCTTAATCTAAGGGACCTCGAATGTCATGCTCTCAGTTTTGGAACCCAATTCAGCTCATAA 1350 0.4178 MAMGMERVQCSYGCLDETFEIRKEMFHGQQYSHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEDKECVIVGTLYKHMKLKPCILDEYSKQKSAVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLRVGSSTSNPLQFQLLLDHITGHLGDEKEQSIASKIVQVVFAGNLVEIPQRLLNGQNLASKDLAIMSEPIRELDILLSQIAAGMPLDIMPGHSDPANFSLPQQSLHGCLFPGSSAYNTFRSCTNPHCFELDNVRFIGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHLAPTTPNTLGCFPYTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGIAVMVSSKSRSLHFNLDMLNLRDLECHALSFGTQFSS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01995 449 Pfam DNA polymerase alpha/epsilon subunit B 178 388 IPR007185 GO:0003677|GO:0006260
Phac1g01995 449 Gene3D - 169 447 - -
Phac1g01995 449 FunFam DNA polymerase delta small subunit 163 449 - -
Phac1g01995 449 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 6 443 IPR024826 -
Phac1g01995 449 FunFam DNA polymerase delta subunit 2 36 160 - -
Phac1g01995 449 Pfam DNA polymerase delta subunit OB-fold domain 30 157 IPR040663 -
Phac1g01995 449 Gene3D - 37 160 - -
Phac1g01995 449 CDD MPP_PolD2_C 177 443 IPR041863 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01995 Phac-Chr1 29734108 29739978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01995 6 448 Core DNA Replication Machinery Family AT2G42120 70.880 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01995 K02328 - gmx:100780072 788.489