Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01978 ATGCGGGTATCAAAGCACAAGCATTTCGGCATGCGAAAAAGTAACAATACCACCAAACCAGCATACTACGTGACTTATGAGTTGAAAGAAAGAAAGAAAAGAATTGAAGCGAGGGAAGTGTTCCCGCCAAGGCCATGGGAATGGAACGAGTGCAGTGTAGCTATGGCTGACGAAACGTTCGAAATTAGGAAAGAGATGTTTCACGGGCAACAGTACAGCCATATTTACTTCGCACGCCTTCATTTGATGCGAACTCTGTTGTATTCTCTCGTTCCTCATTGGAAACCTAATTTTCCCGTGTGCACGGTGCTGGAATTGGAAGAGGACAAGGAATGTGTCATTGTTGGAACCCTCTACAAACACATGAAGCTCAAACCTTGTATACTTGACGAGTATTCTAAGCAGAAATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATGCACTCGGATGATTACCTAGTTTTGGAAGATGAAAGTGGGCGGGTTAAGCTCAGTGGAAATATCATTCCGCCCTCTGAATATGTGACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAAGTGGGGCAGGTGATTTTTTGGTTCAGGATGTACTAGATGCTGGCTTACCCCCACAGATAGAATTTCCCCTTAAATCAGGGGAAGACAAATACGTTGTTCTTGTGTCAGGTTTAAAGGTCGGGAGCAGCACCTCTAATTCTCTTCGGTTTCAGCTTCTCATTGATCATATCACAGCGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCGTCAAAAATTGTTCGAGTTGTCTTTGCTGGAAATTTAGTTGAGATACCTCAGAACGGACAGGATCTTGCAAAAATGTCTGAGGCAATAAGGAAGCTAGACATTCTGTTGAGTCAGATAGCTGCTGGTTTGCCTTTGGATATCATGCCAGGACACAGTGACCCTGCTAATTTCTCATTGCCACAACAGTCATTGCATGGATGCCTTTTCCCTGGGTCTTCTGCATATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATGTCAGGTTTATTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAATATTCGGATGCAAAAGATAAACTTGAATTTATGGAAAGGACATTAAGGTGGAGGCATTTAGCACCCACTACACCTAATACTCTTGGGTGCTTTCCTTATACTGAGAGGGATCCTTTCTTCATTGAGAGCTGTCCTCACGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGGATCATAAAGGGATCAGAAGGGCAGTTAGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTTAATCTAAGGGACCTCGATTGTCATGCTCTCAGTTTTGGAACCCAATTCAGCTCATAA 1407 0.4222 MRVSKHKHFGMRKSNNTTKPAYYVTYELKERKKRIEAREVFPPRPWEWNECSVAMADETFEIRKEMFHGQQYSHIYFARLHLMRTLLYSLVPHWKPNFPVCTVLELEEDKECVIVGTLYKHMKLKPCILDEYSKQKSVVPLVKPHNFMHSDDYLVLEDESGRVKLSGNIIPPSEYVTGIVVALLGKESGAGDFLVQDVLDAGLPPQIEFPLKSGEDKYVVLVSGLKVGSSTSNSLRFQLLIDHITAHLGDEKEQSIASKIVRVVFAGNLVEIPQNGQDLAKMSEAIRKLDILLSQIAAGLPLDIMPGHSDPANFSLPQQSLHGCLFPGSSAYNTFRSCTNPHCFELDNVRFIGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHLAPTTPNTLGCFPYTERDPFFIESCPHVYFVGNQDKFETRIIKGSEGQLVRLICVPKFSETGVAVMLNLRDLDCHALSFGTQFSS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01978 468 Pfam DNA polymerase delta subunit OB-fold domain 71 198 IPR040663 -
Phac1g01978 468 Gene3D - 78 201 - -
Phac1g01978 468 Pfam DNA polymerase alpha/epsilon subunit B 219 421 IPR007185 GO:0003677|GO:0006260
Phac1g01978 468 CDD MPP_PolD2_C 218 462 IPR041863 -
Phac1g01978 468 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 49 462 IPR024826 -
Phac1g01978 468 FunFam DNA polymerase delta small subunit 204 468 - -
Phac1g01978 468 FunFam DNA polymerase delta subunit 2 77 201 - -
Phac1g01978 468 Gene3D - 210 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01978 Phac-Chr1 29599426 29606149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01978 57 467 Core DNA Replication Machinery Family AT2G42120 70.883 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01978 K02328 - gmx:100780072 753.821