Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac1g01974 | ATGGATACTCGCAAGAGGGGAAGACTCGAACTCGGTTTCAACTCCAATGGTGGATTTAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTTCTGGTTGTCCTTTTGGCGAGGGCTGCCACTTCCTGCATTACGTTTCTGGTGGCTATAATGCTGTTGCCCATATAATGAATTTAACGCCTGCTGCACCTCCAGCGCCAAGAAATGTTGCAGCTCTGCCACCTGTTCCAAATGGGTCCGCACCATCTGCTGTTAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCACTGCATCAGGTCGTTTTGCTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCCATCCGGGAGCATGAATCTGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCCTCATCAAAAGCTAACCCAGGGGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTTCCAAAGGATCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAACTGCTGAATTGCGTAAATCAGTATGA | 888 | 0.4595 | MDTRKRGRLELGFNSNGGFKKSKQEMESLSTGVGSKSKPCTKFFSTSGCPFGEGCHFLHYVSGGYNAVAHIMNLTPAAPPAPRNVAALPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTASGRFAGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASSKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGTAELRKSV* | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac1g01974 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 262 | 289 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | Gene3D | - | 261 | 294 | - | - | |
Phac1g01974 | 295 | Gene3D | - | 94 | 131 | - | - | |
Phac1g01974 | 295 | SUPERFAMILY | CCCH zinc finger | 35 | 60 | IPR036855 | GO:0046872 | |
Phac1g01974 | 295 | Gene3D | K Homology domain, type 1 | 164 | 260 | IPR036612 | GO:0003723 | |
Phac1g01974 | 295 | SMART | kh_6 | 167 | 237 | IPR004087 | GO:0003676 | |
Phac1g01974 | 295 | Pfam | RNA-binding, Nab2-type zinc finger | 39 | 59 | - | - | |
Phac1g01974 | 295 | FunFam | Zinc finger CCCH domain-containing protein | 94 | 131 | - | - | |
Phac1g01974 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 34 | 62 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 263 | 287 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 126 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | ProSiteProfiles | Type-1 KH domain profile. | 168 | 232 | - | - | |
Phac1g01974 | 295 | FunFam | Zinc finger CCCH domain-containing protein | 258 | 293 | - | - | |
Phac1g01974 | 295 | SUPERFAMILY | CCCH zinc finger | 261 | 292 | IPR036855 | GO:0046872 | |
Phac1g01974 | 295 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Phac1g01974 | 295 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 22 | 153 | IPR045877 | GO:0003729 | |
Phac1g01974 | 295 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 158 | 239 | IPR036612 | GO:0003723 | |
Phac1g01974 | 295 | CDD | KH-I_AtC3H36_like | 171 | 236 | - | - | |
Phac1g01974 | 295 | Pfam | KH domain | 171 | 233 | IPR004088 | GO:0003723 | |
Phac1g01974 | 295 | ProSiteProfiles | Zinc finger C3H1-type profile. | 99 | 127 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | SMART | c3hfinal6 | 262 | 288 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | SMART | c3hfinal6 | 34 | 61 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | SMART | c3hfinal6 | 99 | 126 | IPR000571 | GO:0046872 | |
Phac1g01974 | 295 | SUPERFAMILY | CCCH zinc finger | 98 | 130 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac1g01974 | Phac-Chr1 | 29547273 | 29550603 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac1g01974 | 35 | 137 | C3H Transcription Factor Family | AT1G68200 | 25.243 | 9.30e-06 | 44.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Phac1g01974 | KH_1 | 1.2e-11 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac1g01974 | - | - | gmx:100803981 | 535.798 |