Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01971 ATGAATTTAACGCCTGCTGCACCTCCAGCGCCAAGAAATGTTGCAGCTCTGCCACCTGTTCCAAATGGGTCCGCACCATCTGCTGTTAAGACCCGCATATGCAACAAATTTAATACTGCTGAAGGTTGCAAATTTGGTGATAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCATATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCACTGCATCAGGTCGTTTTGCTGGTCGAATGGAGCCTTCTCCTGGTCCTGCTACAAGTTTTGGTTCCCATGCCACTGCCAAGATCAGCGTAGAAGCATCCCTGGCTGGTGCAATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATATGCCGCCAAACTGGAGCCAAACTTTCCATCCGGGAGCATGAATCTGATCCTAATATTAGAAACATTGAACTAGAGGGAAATTTTGAGCAAATCAAGGAAGCTAGTAATATGGTGAAGGATTTGCTACTGACCCTGCAAATGTCTGCCTCATCAAAAGCTAACCCAGGGGTTCCTGGTGCACCTATTCGAGAGCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTTCCAAAGGATCTTGCACATTTGGAGAGAGATGCCACTTTGCTCATGGAACTGCTGAATTGCGTAAATCAGTATGA 675 0.4607 MNLTPAAPPAPRNVAALPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPTASGRFAGRMEPSPGPATSFGSHATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNIRNIELEGNFEQIKEASNMVKDLLLTLQMSASSKANPGVPGAPIREHGSNFKTKLCENFSKGSCTFGERCHFAHGTAELRKSV* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01971 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 216 IPR000571 GO:0046872
Phac1g01971 224 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 55 IPR000571 GO:0046872
Phac1g01971 224 PANTHER CCCH ZINC FINGER/TIS11-RELATED 170 222 IPR045877 GO:0003729
Phac1g01971 224 FunFam Zinc finger CCCH domain-containing protein 23 60 - -
Phac1g01971 224 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 87 168 IPR036612 GO:0003723
Phac1g01971 224 CDD KH-I_AtC3H36_like 100 165 - -
Phac1g01971 224 Gene3D - 23 60 - -
Phac1g01971 224 Gene3D - 190 223 - -
Phac1g01971 224 ProSiteProfiles Zinc finger C3H1-type profile. 28 56 IPR000571 GO:0046872
Phac1g01971 224 SMART kh_6 96 166 IPR004087 GO:0003676
Phac1g01971 224 SMART c3hfinal6 191 217 IPR000571 GO:0046872
Phac1g01971 224 SMART c3hfinal6 28 55 IPR000571 GO:0046872
Phac1g01971 224 SUPERFAMILY CCCH zinc finger 190 221 IPR036855 GO:0046872
Phac1g01971 224 SUPERFAMILY CCCH zinc finger 27 59 IPR036855 GO:0046872
Phac1g01971 224 ProSiteProfiles Type-1 KH domain profile. 97 161 - -
Phac1g01971 224 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Phac1g01971 224 Pfam KH domain 100 162 IPR004088 GO:0003723
Phac1g01971 224 FunFam Zinc finger CCCH domain-containing protein 187 222 - -
Phac1g01971 224 MobiDBLite consensus disorder prediction 1 25 - -
Phac1g01971 224 Gene3D K Homology domain, type 1 93 189 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01971 Phac-Chr1 29547273 29550603 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac1g01971 KH_1 7.1e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01971 - - gmx:100803981 400.979