Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01963 ATGGAAGATTTGAAGAAGAGAAAACTAGACGAAGCAGGAAACAGTGATTTTACTTCCAAGGAAGAACTTCGCTTCCTCATCGAACCTCTAGCTAAACCCCAGCTCGTTGATCTTCTAGCTAAACTAGGGTCCCAATATCCTTCAATAGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCCGTGATCTATGATAAAGTAACAGGGAAGTCCCGTGGCTATGGATTTATCACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCCCCTGATCTTTCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCTGAAGTCACTAGTGAAATGCTGCTTAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATATGACAGGGATACCAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCTGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGGTTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCTAACAAAGGTAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTTCCTTACCTATGAGCACAGGCTATATGCAGCCTGGTAAAAGCTCTGGCCCCCCAATAAATTACAATTACCCCCAAACCGTAGCACCATATGCTGCATCTCCTTATCCAAACCCTCACACAGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCAGTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACCCAAACTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1002 0.4361 MEDLKKRKLDEAGNSDFTSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFEEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDLSLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKVLGGRNIIVKYADSNKGKTGQPPFPSGVVPMASLPMSTGYMQPGKSSGPPINYNYPQTVAPYAASPYPNPHTVPSPYPTQGQIPYPPVSAKKDQHGFPPTQTVGMNNYPYYYPKQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01963 333 FunFam UBP1-associated protein 2C 142 240 - -
Phac1g01963 333 FunFam UBP1-associated protein 2C-like 60 141 - -
Phac1g01963 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 55 132 - -
Phac1g01963 333 CDD RRM2_NsCP33_like 156 230 - -
Phac1g01963 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Phac1g01963 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
Phac1g01963 333 Gene3D - 143 240 IPR012677 -
Phac1g01963 333 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Phac1g01963 333 SUPERFAMILY RNA-binding domain, RBD 149 247 IPR035979 GO:0003676
Phac1g01963 333 Gene3D - 55 142 IPR012677 -
Phac1g01963 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Phac1g01963 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Phac1g01963 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Phac1g01963 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01963 Phac-Chr1 29434900 29439163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01963 147 239 C2H2 Transcription Factor Family AT2G19380 34.409 3.05e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01963 K12741 - gmx:100776344 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01963 1 29434900 29439163 Phac1g01963 1 29434900 29439163 ECH