Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01959 ATGGGTTCAGACGCTGCTGCCACCAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACTCCAGCCGCTTCTCTTACTTCTGCTGCTGCTGGAGTTACTTCTTCCTCTTCCTCTTCTTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCTGCCTCCAAGGTGTCAAGTTGAAGGGTGTTTGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGCAAAAGAAGTTGCCGCAGGCGACTAGCGGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGTTCTCTCTTAACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCGTATCCAAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCAACACTTAGCTGGCACGGCAATTCAGAGACACCATCTGACATTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACCCAGGCGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAGCATGGGGTTCTAGAAACACAGTACCAAGTCTTGGGTTGAATAACATGATAAATTTCAATGGGACACCCATGACACAACTTACCGCCTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCTTGGTGTTTCAAGGGCATTGATTCTGGTGACTGTTCGCCTGAGGTGGTCCCTGATCTAGGTCTGGGTCATATTTCGCAGCCACTGAATGGCCAGCTTCATGGTGAGCTGGATCTGTCTCAACAGAGCAGGAGGCATTACATGGATCTAGAACAGTCCAGGACATATGAATCTGCTCATTGGTCACTTTAA 1080 0.4815 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPAASLTSAAAGVTSSSSSSSRKGRGGSVQPALPPRCQVEGCLVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGGNFLMELASYPKLSLRNSLPTPRSSELAPGSQTSTLSWHGNSETPSDIFLQGSVGGTSFAGPGHPPGESYPGVTDSSCALSLLSSQAWGSRNTVPSLGLNNMINFNGTPMTQLTASSHGASLHELPNTSWCFKGIDSGDCSPEVVPDLGLGHISQPLNGQLHGELDLSQQSRRHYMDLEQSRTYESAHWSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01959 359 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Phac1g01959 359 MobiDBLite consensus disorder prediction 186 221 - -
Phac1g01959 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 297 IPR044817 GO:0003677
Phac1g01959 359 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Phac1g01959 359 MobiDBLite consensus disorder prediction 44 59 - -
Phac1g01959 359 MobiDBLite consensus disorder prediction 186 240 - -
Phac1g01959 359 MobiDBLite consensus disorder prediction 44 65 - -
Phac1g01959 359 FunFam Squamosa promoter-binding-like protein 14 62 131 - -
Phac1g01959 359 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Phac1g01959 359 Pfam SBP domain 70 143 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01959 Phac-Chr1 29374889 29380003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01959 19 359 SBP-box Gene Family AT2G42200 44.715 2.21e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac1g01959 SBP 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01959 - - gmx:100807165 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01959 1 29374889 29380003 Phac1g01959 1 29374889 29380003 ECH