Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01929 ATGGATTCGAATTCCCGTTACCAACTTCAGCAACAACACCAACCCAATTCTGGGTTACTTCGCTTTCGCTCTGCCCCCACTCAAGTTCTCGCCAATTTCAAACAAGCCGAAGCTTCCATTAACGGCAACCCCTGGGAGGGTTCTGAACCACTTTTGAGATTCTTCAATTCCGGCGACACCCTGGATACCAACTCCCCTACCTTACGAGAATTCGTGGATAACAAGGTTTCTAATGATAATAAACAACCGCAGGAGTCAACAATATCATCATCCTCCTCATCATTATCACCTCTGAGTCGCATGAATTCCCAGCAAGGTTATAGTACTTCTGTGTTACCCTCTGGGTACCCGAGGCATGATTCTACTGTAACTGTTACTTCATCTATGATGATGGGTTCTATGGGAATGGATCAGAGCGGAAAAGGCTTTAATCCCAATCTTCTCAGGCAGAGTAGCTTCCCTTCTGGCAATTTCTCTAACAACATCTCCTTTCACAACGGGTATGATGCTATGAAAGGTGTTGAAAACTTTGGTGGTGTTAATGACAATGATGGTGAGCTTAGAATATCTATGAACAGGATGAAGAATCACATTAGCTTCTCACCAAGGAGTCCTTCCTTGGGAATTTTATCACCAACCTCTAAAATGGGTTCGGAGGGTCTTAGGGTAACTAGCCCTGAGGATGGTAGACAGGGAGGTAGCAATGGTGATGCTACATATTACGGCCCTGGATTCCCTTGTGCTTCTTGGAATGAGACGCCAAACCCCAAAAGACAGCGAAATAGTAATGATGAGTTGCTTTCTGGAGATCAGAATGGAGAGCTGGGAAATCAAGTTCATTCTCTTTCGCATCATTTGAGTTTGCCAAGAACATCCTCGGACATGTTTGCTATGGACAACTTGCTTCAGTTTAATGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTCGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAAAAGCAAACCAGCACAGCAGAGATGTTGGACTTGGCTGTAGACTACATAAAAAATCTTCAGAATCAATTCAAGACTCTGAGCGAAAGACGGGCCAAATGCAAATGTATAAAGATGCAGAAATCAGAAACAGATAAAATTGCTTGA 1191 0.4341 MDSNSRYQLQQQHQPNSGLLRFRSAPTQVLANFKQAEASINGNPWEGSEPLLRFFNSGDTLDTNSPTLREFVDNKVSNDNKQPQESTISSSSSSLSPLSRMNSQQGYSTSVLPSGYPRHDSTVTVTSSMMMGSMGMDQSGKGFNPNLLRQSSFPSGNFSNNISFHNGYDAMKGVENFGGVNDNDGELRISMNRMKNHISFSPRSPSLGILSPTSKMGSEGLRVTSPEDGRQGGSNGDATYYGPGFPCASWNETPNPKRQRNSNDELLSGDQNGELGNQVHSLSHHLSLPRTSSDMFAMDNLLQFNDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTAEMLDLAVDYIKNLQNQFKTLSERRAKCKCIKMQKSETDKIA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01929 396 MobiDBLite consensus disorder prediction 200 220 - -
Phac1g01929 396 FunFam Transcription factor bHLH130 family 319 388 - -
Phac1g01929 396 MobiDBLite consensus disorder prediction 75 122 - -
Phac1g01929 396 MobiDBLite consensus disorder prediction 252 277 - -
Phac1g01929 396 Gene3D - 320 392 IPR036638 GO:0046983
Phac1g01929 396 CDD bHLH_AtbHLH_like 323 376 IPR045239 -
Phac1g01929 396 Coils Coil 331 351 - -
Phac1g01929 396 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 391 - -
Phac1g01929 396 MobiDBLite consensus disorder prediction 200 277 - -
Phac1g01929 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 383 IPR036638 GO:0046983
Phac1g01929 396 MobiDBLite consensus disorder prediction 1 21 - -
Phac1g01929 396 Pfam Helix-loop-helix DNA-binding domain 324 369 IPR011598 GO:0046983
Phac1g01929 396 SMART finulus 324 374 IPR011598 GO:0046983
Phac1g01929 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 368 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01929 Phac-Chr1 29052999 29056169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01929 1 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.476 1.22e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g01929 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01929 - - gmx:100814652 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01929 1 29052999 29056169 Phac1g01929 1 29052999 29056169 ECH
Phac1g01929 1 29052999 29056169 Phac7g00031 7 252699 254242 ECH