Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01921 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGACGGCGCCACACTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCAGCACCGGCGCCGGAAAACGCCAACTCGTTCACCGCGCTGCTCGAGCTTCCGCCGACGCAGGCGGTGGAACTCCTTCACTCGCCGGACTCTGATGGAGCTCGGAAGCCGCCTAATTGCCACGTCAGCGCTAATCACAAACCCTATTTGCTCAACTCTTTCGGTGGCAATTTGACCTTTCCTTCCAACGCCGCCTTAATTGAACGCGCCGCCAAGCTCTCCGTCTTCGCCGGCGAAAACTCGTCGTCGCCGGGGGAGGCGCGTCTGCTTCCGGCTGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAACCGCAAGAGACCGATTCGAACCCGTGCTCCACGCAAGGATGCGTTTCGGATCCTGCCGTTGAGAACAAGAACGAGAGGACCGCGAAGAGAAAGGAACGAGAGAAGAAAGTAACGGTTAAAGGATCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGACCTCCGGCGATGGTGAGAAGCTTCCCTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGATGGGGCATCTCTAATGGATAGTAACATACCTAGCATGATGACACCTCTCATGTGGCCGGAAATCCCAGTCAATGGCAACCGGCAGCATTACCAACAACAGTGGCAGTTCGATGCATTCCACCAACCGCTATGGGAGAGGGAAGAAGTCAACCACAATTTTATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCGAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1104 0.5217 MEQAPVGLRGSVHDGATLESIQFNEEIQGIMAPAPAPENANSFTALLELPPTQAVELLHSPDSDGARKPPNCHVSANHKPYLLNSFGGNLTFPSNAALIERAAKLSVFAGENSSSPGEARLLPAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPAVENKNERTAKRKEREKKVTVKGSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNIPSMMTPLMWPEIPVNGNRQHYQQQWQFDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01921 367 MobiDBLite consensus disorder prediction 158 193 - -
Phac1g01921 367 Gene3D - 204 276 IPR036638 GO:0046983
Phac1g01921 367 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Phac1g01921 367 SMART finulus 213 263 IPR011598 GO:0046983
Phac1g01921 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Phac1g01921 367 CDD bHLH_AtBPE_like 197 282 - -
Phac1g01921 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Phac1g01921 367 MobiDBLite consensus disorder prediction 139 154 - -
Phac1g01921 367 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 351 IPR024097 GO:0006355
Phac1g01921 367 FunFam transcription factor bHLH48-like isoform X1 204 276 - -
Phac1g01921 367 Coils Coil 247 267 - -
Phac1g01921 367 MobiDBLite consensus disorder prediction 110 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01921 Phac-Chr1 28986292 28997515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01921 7 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.073 1.80e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g01921 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01921 - - vun:114168708 669.077