Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01911 ATGTTTCCAACTGCTGCTGCTACTTCTGAAGGATCCTCAGTTTCGGGTCATGAGAGGAACGAGTCTCACCCATTTGAAGGAGTTCGAAAAGTCACGGATAAATCGATCTATATAGCTGAAGTACGTGAGAATGATGAAACCAAGGGCGAGGAAATAAGTAAATTTGACAATGAGGTAAATGCAGCAAGAGCTCATGACTTGGTGGCCCTGAAACTTAGGGGATCCGGTGTAAAAACAAACTTTCCAGAAAGTCAATACAAGGCAGTACTGGAGACTATGACTGATATGTCAAAAACAGAAGTTGTGGATTCTGTCAGAATGTTAAGTTTCAGTTTTATGAAGTCCATATCCATGTACCGTGGAGTCTCCAGAGATTTCTCTACTGGGAAATGGCAAGCAGATCTGCACAAAGGCAACGACGATCGCATGTTCCTTGGATTATTCGACACAGAAGAGGAAGCAGCTAGGGCTTATGATGTTGCGAGCATAAGGTTGAAAGGGCTCAGCGCCATTACTAATTTCAGTATCAGGTTTTATGATGTTGATGCCATTTTGCTTGGGCAAACTGATCATGAAAAAATGGTATATGAGTCAAAAGTCACTGTCCCTGTGGAAGATATGCAGCATTGTGAAGTGTTTCAGAACATTACTGGCCAAGGCTCTTCAACAATGGTATATGGTAGTAGTGAAGGCAATCTGAACAGGGTGGGGGTGGAAGAATTTCAAATGCCGTTGATGTCAGGAAACACAGAAGAGCAGGCAAATTCTGTGGCATTGGCCTCATTAGAAGGAAATAGCTCCACTACAAATGTGCCCTTAGAAAGAGAAAGTGACACTACAAGAAATGTGGACAGAAGTGGAGAGGATTATGGTCGGAGAAGCACGGCCAGGGAAAGGTTCAATGCTTATAAGAAATTCATCAAGAGGCCTAGACCAAGTTGA 942 0.4299 MFPTAAATSEGSSVSGHERNESHPFEGVRKVTDKSIYIAEVRENDETKGEEISKFDNEVNAARAHDLVALKLRGSGVKTNFPESQYKAVLETMTDMSKTEVVDSVRMLSFSFMKSISMYRGVSRDFSTGKWQADLHKGNDDRMFLGLFDTEEEAARAYDVASIRLKGLSAITNFSIRFYDVDAILLGQTDHEKMVYESKVTVPVEDMQHCEVFQNITGQGSSTMVYGSSEGNLNRVGVEEFQMPLMSGNTEEQANSVALASLEGNSSTTNVPLERESDTTRNVDRSGEDYGRRSTARERFNAYKKFIKRPRPS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01911 313 CDD AP2 117 174 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 MobiDBLite consensus disorder prediction 277 295 - -
Phac1g01911 313 MobiDBLite consensus disorder prediction 1 15 - -
Phac1g01911 313 Pfam AP2 domain 119 167 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Phac1g01911 313 Gene3D AP2/ERF domain 118 178 IPR036955 GO:0003700|GO:0006355
Phac1g01911 313 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Phac1g01911 313 ProSiteProfiles AP2/ERF domain profile. 24 82 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Phac1g01911 313 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 MobiDBLite consensus disorder prediction 1 26 - -
Phac1g01911 313 MobiDBLite consensus disorder prediction 261 295 - -
Phac1g01911 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 192 - -
Phac1g01911 313 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 SMART rav1_2 24 88 IPR001471 GO:0003700|GO:0006355
Phac1g01911 313 MobiDBLite consensus disorder prediction 261 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01911 Phac-Chr1 28922413 28927887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01911 42 185 AP2-EREBP Transcription Factor Family AT1G51190 47.973 5.44e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g01911 AP2 4.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01911 K09285 - pvu:PHAVU_001G137600g 394.045