Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01906 ATGGAAGACTATGAAGTGATAGAGCAAATAGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGATCACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTCGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTGGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCAGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGGAAAAACCCTGAGCATAGGCCAACCGCAGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCATCTAATATTCTTCCAGTATATCCTCTCGTTAATTCAAAGGATAAATCAAAAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGAATTCATCCAATTGAGGGAAATGGAGATATACACGTAAGCAATCTTCCTAATGATGCTGTTACAATCTCAACCAGTGCAGAAGACAATATTGAAACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTAACAACGAAATCTCTTTAAAGGGTACACAAGAATCTCCGCATGAGGAACAAATATTTGCAGCTAAACATTTTCATAATTTAGAAGATGACATTAATGCAGTGAGCGCAGAAGTTGAAGATGGTTCTTGCAATGAAGGTTTGGATAATGCTGAAGCACGGAGGGAAGATTCGAACCTTGACATCTCTGGTAAATTAACAATGTCCAGTGCAGGCAGTAGCAGCCCTGATAAAGATAAGTCCGTCAACGAGGAAAAACCATCACTAACTGTGAATCCTATTAGGGTTGGACATGATACCGAATCTGGAAACCACTTGAATGTATTTACAGAAGGGTCACATATGAACTGCTTGACATCTGATTGTAATGATGCACTTGTAGTGAAGGATGATGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGATAACACGGTGGAGGTTGATCAGAAAAGTAGCGTTTCATTGAGTGTAATAACAGAAGTCGATGGTGATGAGACAATCACGACTCTGTTGGATAGTCCCTGCCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTTCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATGTCTGCCCAAAAATTTAATCCCGAAACCTAG 1884 0.4124 MEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPLVNSKDKSKRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDIHVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKSRPARETANNEISLKGTQESPHEEQIFAAKHFHNLEDDINAVSAEVEDGSCNEGLDNAEARREDSNLDISGKLTMSSAGSSSPDKDKSVNEEKPSLTVNPIRVGHDTESGNHLNVFTEGSHMNCLTSDCNDALVVKDDDTANRHILSTHKDDNTVEVDQKSSVSLSVITEVDGDETITTLLDSPCQQRADALESLLELCAQLLKQDKLEELSGVLRPFGKEAVSSRETAIWLAKSLMSAQKFNPET* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01906 627 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Phac1g01906 627 SUPERFAMILY Protein kinase-like (PK-like) 1 286 IPR011009 -
Phac1g01906 627 MobiDBLite consensus disorder prediction 282 304 - -
Phac1g01906 627 MobiDBLite consensus disorder prediction 430 487 - -
Phac1g01906 627 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01906 627 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Phac1g01906 627 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01906 627 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01906 627 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 578 - -
Phac1g01906 627 Gene3D Transferase(Phosphotransferase) domain 1 86 313 - -
Phac1g01906 627 MobiDBLite consensus disorder prediction 435 449 - -
Phac1g01906 627 MobiDBLite consensus disorder prediction 450 465 - -
Phac1g01906 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Phac1g01906 627 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Phac1g01906 627 FunFam Serine/threonine-protein kinase Nek6 1 83 - -
Phac1g01906 627 CDD STKc_Nek 3 258 - -
Phac1g01906 627 MobiDBLite consensus disorder prediction 283 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01906 Phac-Chr1 28858465 28864622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01906 4 259 MAP Kinase Kinase Kinase AT3G13530 33.074 1.24e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phac1g01906 Pkinase 6.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01906 K08857 - gmx:100793379 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01906 1 28858465 28864622 Phac1g01906 1 28858465 28864622 ECH