Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01890 ATGGCAACGGCGGGGAGTAAGAAGCCTCTCTCTTTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGATGCTGAGATTTCAAGCTCAATTGCTACCGGCGCGTCCAGGAATTTGGACACTGCTCAAAAGAGGGGTTCCACAATCCTCAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACCAAAGGAGATGTTCTTCCTGCACATAAGTTTGGTACTCACGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGATGCGCTGATACAGTTGAGTAAAGGAGTGCACAGGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATATATCCTTCACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTCGAAAGCTCTATCATCAAAGAATGTGTTCTTGCTGCATGGACCACCTGGAACTGGAAAAACTACAACAGTTGTAGAAATTATATTACAGGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCAAATATTGCTGTTGACAACATTGTAGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTCCTGAAAACCAAGGACAGAAATACAAGAAAGGACATACAAAAGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTTCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACACTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACGTCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGGGAAGGGGGTAAACATTTCATTTGATCATCCTGCATGGCATTACGTGTTAACAGATCAAGGCTCATCCAAGTGTTACTGCACATATGTTGTATGA 1470 0.4279 MATAGSKKPLSLQQFISVTAPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPVLFGERPPTVSKKDISFTPYNRNLDQSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQKELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILSGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTVQYRMHELIMDWSSKELYNSKGKGVNISFDHPAWHYVLTDQGSSKCYCTYVV* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01890 489 CDD DEXXQc_SMUBP2 193 441 - -
Phac1g01890 489 Gene3D - 20 424 IPR027417 -
Phac1g01890 489 FunFam DNA-binding protein SMUBP-2 38 140 - -
Phac1g01890 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 460 IPR027417 -
Phac1g01890 489 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 33 458 - -
Phac1g01890 489 SMART ultradead3 190 441 IPR014001 -
Phac1g01890 489 Pfam AAA domain 194 408 IPR041677 GO:0004386
Phac1g01890 489 Pfam AAA domain 417 458 IPR041679 -
Phac1g01890 489 Coils Coil 295 315 - -
Phac1g01890 489 Gene3D - 38 140 - -
Phac1g01890 489 SMART AAA_5 208 460 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01890 Phac-Chr1 28659859 28667119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01890 167 377 Core DNA Replication Machinery Family AT1G08840 26.540 9.84e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01890 - K19036 gmx:100801854 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01890 1 28659859 28667119 Phac1g01890 1 28659859 28667119 ECH