Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01889 ATGGATACTTGCAAGAAGTCCCCCCTGAAGCCATGGAAGAAAGGACCAACTAGGGGGAAAGGTGGTCCCCAGAATGCCTCTTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAAAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGTTGCCCAGGTCTACCTCACCTATTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCCATGTTCCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTACAAGAGCTTAAGCAAAATACAGTTGAGAGGCAATCCCCAAATAGCTCATTCAATGATCCAGAGGCAGAAATTCAGAATGTAGACGCCACGATTGATGGAGAAAGTCCTCCAAAAGACTCTCAAACATCATCATCAGAGGTTCTAGGAGATCTTCAAGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTAGGAATACTAAAAGAAGAAAGACAGTCAGACAGAACTGATAGCACAGAAAGTTCAACAGTGCCTGAAGCTGTGTTGAGAGATGACAATGATGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATAGCAGGTATTGAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCCCAAATGATGATCTTACTTTCTCAACTTCCATTTGGAACTTCTAG 843 0.446 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLLPRSTSPITPGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKQNTVERQSPNSSFNDPEAEIQNVDATIDGESPPKDSQTSSSEVLGDLQEKPQIDLHEFLQQLGILKEERQSDRTDSTESSTVPEAVLRDDNDELGVFSDTSVNWEALIEMHGIAGIEELESTQLEAYGPNDDLTFSTSIWNF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01889 280 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Phac1g01889 280 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Phac1g01889 280 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Phac1g01889 280 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 243 - -
Phac1g01889 280 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Phac1g01889 280 MobiDBLite consensus disorder prediction 204 225 - -
Phac1g01889 280 MobiDBLite consensus disorder prediction 1 27 - -
Phac1g01889 280 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Phac1g01889 280 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Phac1g01889 280 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Phac1g01889 280 MobiDBLite consensus disorder prediction 163 182 - -
Phac1g01889 280 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Phac1g01889 280 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01889 Phac-Chr1 28657544 28658386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01889 5 280 AP2-EREBP Transcription Factor Family AT3G57600 51.546 8.51e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g01889 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01889 - - var:108328773 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01889 1 28657544 28658386 Phac1g01889 1 28657544 28658386 ECH