Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01870 ATGGGGACTCCGGAATTCCCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATATTGTTTGGAACACAGAGGTTATATTGAACACAAGTGCACAAAGCCCAACAAAGAAGATGTAACAGTTGTCATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAACTTGGGAGCATCATGTTAACATTGATTGTGACCCATCAAATTACGAAAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTGGTATTCTCCAACACAATCAAATGCAGGGATTGCTTGGAAGACCATTGTTTGAAGCACCGGTTTGGTTCTGATCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGGGTTTTTTTAATACGACTAAACAAGAGGAGCCAAAGCCCAATTTAACTTCAACAGCATCATCTAACTGGACTTCAAGCTTTCTCAACGTGGCTTCTAATATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTGAGCAATGAAATTAACCAAGTTTGGCTGTCAGCTAGAGATGGTGTGGGACAAAGCAATGGCAGTGGAAATAGAAATGATGATCAAGGGGAGCATTGCCCTCAATGTGGTGTAAAGTTTTCCTCTGCGACTTCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGCAATGGGAAACGATTAGGGGTTAAGAAGATTGAGGATATGCCCCAAGTGTAG 801 0.427 MGTPEFPNLGKHCSVSDCRQLDFLPFTCDRCNQIYCLEHRGYIEHKCTKPNKEDVTVVICPLCAKGVRLIPDQDPNITWEHHVNIDCDPSNYEKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGSDHKCSGPKKLETSFSFMGFFNTTKQEEPKPNLTSTASSNWTSSFLNVASNIRASAEASMSKLSNEINQVWLSARDGVGQSNGSGNRNDDQGEHCPQCGVKFSSATSLVDHVQKVHESNGKRLGVKKIEDMPQV* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01870 266 SMART c2h2final6 225 248 IPR013087 -
Phac1g01870 266 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Phac1g01870 266 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Phac1g01870 266 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Phac1g01870 266 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Phac1g01870 266 Gene3D - 2 58 IPR035896 -
Phac1g01870 266 Gene3D - 86 167 IPR035896 -
Phac1g01870 266 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Phac1g01870 266 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Phac1g01870 266 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Phac1g01870 266 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Phac1g01870 266 Pfam zinc-finger C2H2-type 226 248 IPR041697 -
Phac1g01870 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Phac1g01870 266 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Phac1g01870 266 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Phac1g01870 266 Gene3D Classic Zinc Finger 226 251 - -
Phac1g01870 266 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01870 Phac-Chr1 28418637 28420521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01870 1 253 C2H2 Transcription Factor Family AT3G57480 57.915 1.81e-102 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g01870 zf-AN1 8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01870 - - gmx:100806459 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01870 1 28418637 28420521 Phac1g01870 1 28418637 28420521 ECH