Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01808 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACGTCGGAAGTGGCGGTGGCAACCGATCAGCTCTTACTCTACCGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACTGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGCGCTGCTGGAAAACGCAGCTCAATTTACCGCGGTGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCGCATCTCTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGACTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGTCGATGGGAATCGTCATATGGCCGCATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGGGATGATTCAGCAGCAGAAAGTGAATATGTCAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGTACAAGATTATCAGAAGAAAAAAAACTTGGTTCTGCTGGAGATATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGCAGGCCACACAACGAGAAAAAGCAAAGAAGTTCTTCGGTCTCTGCCTTAAGAATCCTTTCACAATCTGCTGCTTACAAGAGCTTACAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAATGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTATCCTTTGACACCATTCTTGTCTGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACGTCTCTTGTTCCCGTACATCCTGCTGGCCTTTCTCGTACGACTGAGGTTACCAAGACAGAGACCAGTTCATCATACACAATGTTTCAGCCAGAGGAATGA 1236 0.4442 MASSSSDPGKSAETSEVAVATDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRMSGSDYFNSMHYGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKRQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGNDRLDIAMGMSGTMPLQRNVYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVHPAGLSRTTEVTKTETSSSYTMFQPEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01808 411 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700|GO:0006355
Phac1g01808 411 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 297 - -
Phac1g01808 411 MobiDBLite consensus disorder prediction 289 334 - -
Phac1g01808 411 Pfam AP2 domain 59 114 IPR001471 GO:0003700|GO:0006355
Phac1g01808 411 MobiDBLite consensus disorder prediction 250 275 - -
Phac1g01808 411 FunFam AP2-like ethylene-responsive transcription factor 58 124 - -
Phac1g01808 411 SUPERFAMILY DNA-binding domain 58 123 IPR016177 GO:0003677
Phac1g01808 411 Coils Coil 295 315 - -
Phac1g01808 411 SMART rav1_2 59 128 IPR001471 GO:0003700|GO:0006355
Phac1g01808 411 MobiDBLite consensus disorder prediction 292 331 - -
Phac1g01808 411 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700|GO:0006355
Phac1g01808 411 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Phac1g01808 411 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01808 Phac-Chr1 27815985 27819884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01808 17 395 AP2-EREBP Transcription Factor Family AT2G41710 63.683 2.50e-159 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g01808 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01808 K09285 - gmx:100814117 758.059