LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g01667	ATGGGGCTGTGTCATGGAAAACCCGTTGAAACCTCACAAAGTGAAGGTGGGCACCACGTTTTCCCCGGCGAGAAAGAGGTAGTGGTGGCACCGAGTCCCAAAATCGCTTCAAAAGGTTCAAAGTTTCCGTTTTACAGTCCAAGCCCCTTGCCGAGCCTGTTCAAGAACTCGCCGGCGAACTCGAGTGTGAGTTCGACACCTCTGCGGCTCTTCAAGCGGCCCTTTCCGCCTCCGTCGCCGGCGAAGCACATTCGCGCCTTACTGGCCCGCCGCCACGGTTCCGTCAAGCCCAATGAGGCCTCCATCCCCGAAGGGAGTGAGTGCGAGGTTGGGCTCGACAAGAGCTTCGGCTTCTCCAACCACTTCCACGCTCACTATGAGCTTGGTCCCGAAGTGGGCCGTGGCCACTTTGGCTACACTTGCTCTGCCAAGGGAAGAAAAGGCACCTTCAAGGGTCATGATGTTGCTGTCAAAGTCATTCCAAAGTCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTTTGACTGGGCACAAGAATCTGGTGCAATTCTATGAAGCCTATGAAGACAATGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTAGATAAGATTCTTTCCAGGGGTGGAAAGTACTCCGAAGAAGATGCCAGAATTGTTATGATTCAGATATTAAGTGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTCTATATTTCTACGGAGGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTTTCTGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGCAGCCGACCCTTTTGGGCAAGGACAGAGTCTGGCATATTTCGGGCTGTCCTGAAGGCTGATCCAAGTTTTGATGAAGCTCCTTGGCCATCTTTATCAGCCGATGCAGTAGATTTTGTAAAGAGACTGTTGAATAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCATTACGCAAATCGGCATTAGGGGCTCTTGCAAAAACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAATTCAACATGTTAGGGCCAAACAAAAGTGGGTTAATCTCCATGCAGAACTTCAAGACGGGTATTTTAAGAAGTGTCACAGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGGTTAGTTCAATCCAATATCGTAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGGCCAATTATGATTGAAGAGCTTGCCTCGGTAGAGAATCAGAACCAATGA	1626	0.4539	MGLCHGKPVETSQSEGGHHVFPGEKEVVVAPSPKIASKGSKFPFYSPSPLPSLFKNSPANSSVSSTPLRLFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSNHFHAHYELGPEVGRGHFGYTCSAKGRKGTFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPENFLYISTEENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGALAKTLTLVQLAYLREQFNMLGPNKSGLISMQNFKTGILRSVTDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASVENQNQ*	542

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g01667	541	Gene3D	-	408	537	-	-
	Phac1g01667	541	ProSiteProfiles	Protein kinase domain profile.	126	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g01667	541	SUPERFAMILY	EF-hand	418	536	IPR011992	-
	Phac1g01667	541	FunFam	CDPK-related kinase 1	119	214	-	-
	Phac1g01667	541	FunFam	Calcium-dependent protein kinase SK5	298	393	-	-
	Phac1g01667	541	MobiDBLite	consensus disorder prediction	1	23	-	-
	Phac1g01667	541	Pfam	Protein kinase domain	126	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac1g01667	541	FunFam	CDPK-related kinase 3	118	290	-	-
	Phac1g01667	541	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	250	262	IPR008271	GO:0004672\|GO:0006468
	Phac1g01667	541	ProSitePatterns	Protein kinases ATP-binding region signature.	132	158	IPR017441	GO:0005524
	Phac1g01667	541	Gene3D	Transferase(Phosphotransferase) domain 1	216	406	-	-
	Phac1g01667	541	CDD	STKc_CAMK	125	387	-	-
	Phac1g01667	541	PANTHER	SERINE/THREONINE-PROTEIN KINASE	112	536	-	-
	Phac1g01667	541	SUPERFAMILY	Protein kinase-like (PK-like)	119	417	IPR011009	-
	Phac1g01667	541	Gene3D	-	429	498	-	-
	Phac1g01667	541	FunFam	CDPK-related kinase 1	426	498	-	-
	Phac1g01667	541	Gene3D	Phosphorylase Kinase; domain 1	119	215	-	-
	Phac1g01667	541	SMART	serkin_6	126	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac1g01667	Phac-Chr1	25352849	25359081	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g01667	1	535	EF-hand Containing Proteins	AT3G50530	65.195	0.0	764

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Phac1g01667		Pkinase	4.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g01667	-		-	gmx:100803625	1001.89