Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01646 ATGAGAAGCGGAATTGAGCTGTCGATTTCGTGTTCAAGTTTTGGATCTGCGAGGATGAAGTCTTGGTCAGTGGATGAGTGGAGGGAGTACTTTGTGTCTTCTAATTCGGATATATTCGAGATAATTGAGAACGCGATAATCGTGGCGGCTTCGGATTGTCCGAAGGAGTTTAGAGTGAGGAGGGATACGATTGCGGAGAGGCTGTTCTGTTCCAGCTTGACTCGCTGTGCGGGGTGTGACCGTGCGGAGTTGGCTGTGAGGGGAGTTGGTAAAGAGAGTGATGGCGGGGGTTGCAAGAATGCGGTAGAAAGAGATGGGGGTGAGTTCGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGTGATGAGGATGCAGAGATTGATGTGAACGGTGTTAGCAACTATAGTTTTGGTGAGGCCGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATGTAGGGGAGATTTTGAGGATCAAAGGTGTTCTGCTTAACCGTGATGAAGAGTCTGAGTCTGTGTTATTTGAATCGTTGAGGAGGCTTCAACTGATGGAGCTCACCGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGAAAACGCGGATCAAAGGATATTCGTCAACTTGCAAAGACTCTTATCGATGGCTGGAAACAAATGGTTGATGAATGGGTGAAGGCCACTGCTACTACAGCTATTGCAGCTTCAGATGAAGGCACACCGGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCACCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGGTTCCATAGAACTTTCGCAGTTCTTTGATGGCATGGACGATGATGGAAATCCTCGACCAAGTGGCCCATCCCACAAGAACCGTGACAGTAATAGCAGAAAGCCAGCCATCCCTAACAGGGAGGATAAGAGTCAACAAGCCAAGAGAAATGATGCTGATGTGCCCGTGAGGCCAAATAAGCCAGTAACCTCTGATTCTGGCCCTGGCAGACCCCTCCAATACAATATGCAAAGAAAAAGTAATGTGGAGCCAAAGGTTCAGCAAAAAGTAGAGAACAATTCAGTCACAAGGAGGCCTCCCATTGGTCATCTAGATAAATCCATGCATTCAGATGATGCGGCTGTCCAAGTAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAATGATCTCCCGAAGCATGTTAACTACCGAAATCCACATTCCAAGCCTGGTTATCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1365 0.4674 MRSGIELSISCSSFGSARMKSWSVDEWREYFVSSNSDIFEIIENAIIVAASDCPKEFRVRRDTIAERLFCSSLTRCAGCDRAELAVRGVGKESDGGGCKNAVERDGGEFAGASKESKVNEGGDEDAEIDVNGVSNYSFGEAEALTDEMDEETQYVGEILRIKGVLLNRDEESESVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKRGSKDIRQLAKTLIDGWKQMVDEWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTGSIELSQFFDGMDDDGNPRPSGPSHKNRDSNSRKPAIPNREDKSQQAKRNDADVPVRPNKPVTSDSGPGRPLQYNMQRKSNVEPKVQQKVENNSVTRRPPIGHLDKSMHSDDAAVQVKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKHVNYRNPHSKPGYHNRNRANTRR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01646 454 Pfam TFIIS helical bundle-like domain 180 228 IPR017923 -
Phac1g01646 454 MobiDBLite consensus disorder prediction 345 374 - -
Phac1g01646 454 ProSiteProfiles TFIIS N-terminal domain profile. 156 231 IPR017923 -
Phac1g01646 454 SMART TFS2_5 155 230 IPR003617 GO:0005634
Phac1g01646 454 MobiDBLite consensus disorder prediction 109 129 - -
Phac1g01646 454 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 146 241 IPR035441 -
Phac1g01646 454 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 21 441 IPR044805 -
Phac1g01646 454 MobiDBLite consensus disorder prediction 240 274 - -
Phac1g01646 454 MobiDBLite consensus disorder prediction 286 390 - -
Phac1g01646 454 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 154 235 IPR035441 -
Phac1g01646 454 Coils Coil 395 422 - -
Phac1g01646 454 MobiDBLite consensus disorder prediction 298 334 - -
Phac1g01646 454 CDD TFIIS_I 157 229 - -
Phac1g01646 454 MobiDBLite consensus disorder prediction 427 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01646 Phac-Chr1 24951564 24955895 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phac1g01646 Med26 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01646 - - gmx:100799367 642.499