Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g01642 | ATGGCATCAAGAACCACCGTTAAACAACAGGGCACAGACGAAGCAGTAGTGGAGGGAGGGAAACAGCAGAAGAAGAAGGGTGTAACGAATGGAAGGAACCGCAAGGCATTAGGTGATATTGGGAATTTGGCCAATGTAGGAGAAGTTGAAGTCAAGCCTAATCGCCCCATCACAAGGAGTTTTGGAGCTCTGCTACTTGCCAACGCACAAGCAGAAGCAGCAGCAGCTGCTGATAAGAATAAGAATAACAAGAAACAGGTTTCTGCCAATGTGGCTGGACCTCCACCTGTTTCTAATGCAGTTGAAGTGACCAAAAGAGTGGTCCATAAACGGTGTCAGAAGAAAGTCACTGTAAAACCAAAACCTAAGAAAGCCATTGACAAGGAAGCTATCCCAAATAAGAAGATCCAGAAAGACAAGAAAAGGGAAGGAGATGACAACTCCAAGAAGAAAACACACGCTTTTACTTCAGTGCTCACAGCTCGAAGCAAGGCAGCGTGCGGCATAACTGACAAACCGAAGGAGCAGATTATTGACATTGATGCTGGTGATGTCGACAATGAGCTTGCTGCTGTGGAGTATATTGATGACCTTTACAGGTTCTATAAGCTTTTTGAGAATGAGAACCGCCCTCATGACTACATAGACTCACAACCTGAGATAAAGGAGAGGTCGAGAGCTATATTAGTTAATTGGCTGATTGAAGTCAACACCAAATTTGACCTTTCACTTGAGACCCTTTACTTGACAATCAATATAATTGATCGGTTCCTATCAGTTAAGAGTATTCCAAGTTGTAGGGAACTGCAGTTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCCCCTCAGGTTGAGGATTTTGTCTGCCTTACAACTTACACTCATGAACAGATACTGGTCATGGAGAAAACAATACTAGGTAATCTGGAATGGACTTTGACAGTCCCAACATCTCTTGTTTTTCTGATTCGTTTTATCAAGGCAACAGTCCCAGATCAGGAGTTGGAAAACATGGCTCATTTTCTGTCTGAGTTGGGATTGGTGCACTATACCACCGTAATGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGAGACTTAAGCTGCACACGGGTTATTCAATAGAACAACTTATCTTTGTTGGTTGCAAACAGGGAATGTGCTAG | 1233 | 0.438 | MASRTTVKQQGTDEAVVEGGKQQKKKGVTNGRNRKALGDIGNLANVGEVEVKPNRPITRSFGALLLANAQAEAAAAADKNKNNKKQVSANVAGPPPVSNAVEVTKRVVHKRCQKKVTVKPKPKKAIDKEAIPNKKIQKDKKREGDDNSKKKTHAFTSVLTARSKAACGITDKPKEQIIDIDAGDVDNELAAVEYIDDLYRFYKLFENENRPHDYIDSQPEIKERSRAILVNWLIEVNTKFDLSLETLYLTINIIDRFLSVKSIPSCRELQLVGISAMLMASKYEEIWPPQVEDFVCLTTYTHEQILVMEKTILGNLEWTLTVPTSLVFLIRFIKATVPDQELENMAHFLSELGLVHYTTVMYCPSMVAASAVFAARCTLNKTPLWNERLKLHTGYSIEQLIFVGCKQGMC* | 411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g01642 | 410 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Phac1g01642 | 410 | Pfam | Cyclin, N-terminal domain | 200 | 320 | IPR006671 | - | |
| Phac1g01642 | 410 | SUPERFAMILY | Cyclin-like | 186 | 320 | IPR036915 | - | |
| Phac1g01642 | 410 | Pfam | Cyclin, C-terminal domain | 323 | 400 | IPR004367 | - | |
| Phac1g01642 | 410 | Gene3D | - | 211 | 321 | - | - | |
| Phac1g01642 | 410 | FunFam | G2/mitotic-specific cyclin | 210 | 321 | - | - | |
| Phac1g01642 | 410 | PANTHER | CYCLINS | 141 | 386 | IPR039361 | - | |
| Phac1g01642 | 410 | MobiDBLite | consensus disorder prediction | 120 | 151 | - | - | |
| Phac1g01642 | 410 | SUPERFAMILY | Cyclin-like | 322 | 401 | IPR036915 | - | |
| Phac1g01642 | 410 | Coils | Coil | 66 | 86 | - | - | |
| Phac1g01642 | 410 | PIRSF | Cyclin_A_B_D_E | 1 | 409 | IPR046965 | GO:0016538|GO:0044772 | |
| Phac1g01642 | 410 | SMART | Cyclin_C_2 | 323 | 410 | IPR004367 | - | |
| Phac1g01642 | 410 | MobiDBLite | consensus disorder prediction | 115 | 151 | - | - | |
| Phac1g01642 | 410 | Gene3D | - | 197 | 400 | - | - | |
| Phac1g01642 | 410 | SMART | cyclin_7 | 231 | 314 | IPR013763 | - | |
| Phac1g01642 | 410 | SMART | cyclin_7 | 327 | 409 | IPR013763 | - | |
| Phac1g01642 | 410 | ProSitePatterns | Cyclins signature. | 226 | 257 | IPR006671 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g01642 | Phac-Chr1 | 24774595 | 24777435 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g01642 | 31 | 403 | Core Cell Cycle Gene Families | AT3G11520 | 54.521 | 1.91e-128 | 374 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g01642 | K21777 | - | gmx:547919 | 556.599 |