Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01633 ATGCCTTCGAGCTCGAATTCGAAGCAGAAAAAGAAGCAATCGAAGGCGCAGCTGCAAAACTCACCATTGTCGTCGAATACCACCATAACGCCTTCTAGAACGCAGCCACAACAACCACAAGAGCATGCCTCTTTGTGCGTAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTGAATCCGCGTTCGTCGCCGAAATCATCCATGTCGACGACACCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTATCCGAACCTTCCATGCTCTCCTCCTCTCTCTCCCCCGGTTCCATTGTCTCGGTGTCTGTTCCATCTTCAGACGAGAAAAATTCACAATTACATAGTTTTCCCCTAGTGTCATTAGCTAATGAATGTGCCAAATGCAATGGACTGGAAATTGGGAAGGCAGTTGATGATTATGTTGCGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTTGAAGAATGGCGTACGACTGTCTTCCAACCTTTATTATACCATGGGATGTCCTCCTATGGGAACAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGAGAGCAATCAACAGCATTATATGGAAAATAATCGTCTACCTATTAATAATTGCAAGAAATTGTATCTTCAGTTGGTTCCTTCTAAAAAGGGGCTACCGTTGAAGTTTAATAGTTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTCATGTCCAATTTGAGAATGACACTGTTGGTTCTCCTGCAACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGTCTGTCTTCTCCACAATTTGACGATTCAGCATCTAGTGTGCCAAATCATAAGAGTCAATCTCTGATTTCATCTGATGTCAGCTTAGCATTAAGGGATGAAAATTCTAAACAATTGCTTGAGACATGGGCAACTTCATGGTTATATTCTCGATCTTTACTTCTAGGAAATCTTGTCAGTGTTCCAATGTTTTCAGAGTGCTTTTTCCAAGTGATAGGAGCTAAAAAGCAGTCAGTTACCAAATCTGATCATTATCCATCAAATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGTAAATCAGGCTTTCACTGTTAATTACGAAACAAAGGTATTTTTATCTCTGCCATCAAATACAGCATCTGAAGAGCCAATTCAAAGGGACATACATTGTGTGAAACTAGATCACAAAGTTGGTAATGCTAGCTTACCAGATAGAATCTCTAAATTGGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCGTCACTGAATGATGCTTTATCAAGTTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACTGGTACAGGAAAGACTTCCCTGGCTCAACTATGTACTCATGACGTGGGAGTCAAATTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCATTGCATAAAGTTTTTGATTCAGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTGAATATGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATCGCTGCCACTAACCGCCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGACGATTTGACAAGGAAATTGAAATTGGTGTTCCATCCCCCAAACAACGTTCAGATATTTTGCTCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGAGGTACAAATTCAACACCTTGCCACAGTTACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGAATTGTCTGCGACATTATGCCAGCTTTAAGAAGACTTATGATTCTTGTTCTAATTATATAACCGATAAACCTGTTCTGGTGAATGGTGTAACAAACTCAATAGATCATTTGGATGAGGCAACTTCATCCATTTCAGATTTGTCGGCCACCAGTCCTGTATTACGTCCTTGCAGGATAAGAACAACTTATGAAACTACAGAAATAATTCCTGAGAGTGTTGAAGAAGAGCAGATTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTTGACCGTATTGGAACTCGCCCTCCTACCGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAGACCCTCATGGCACGTGCAGTTGCTTCTGAAGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGATGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGGCGCTTTGACCGTCTGCTATATGTTGGACCTCCGAATGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTGCGTAAAATCCCATGCGGTTCTGATGTCAATCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATTCCAATCGATCGGATCCAGCGATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCACAGCTGTTATATGAAGGATGAATTGAATGATACGCAGTGCGACACTAAACCTATCCAGTTCAACGTTTGGAAGTTCATAAAATCTTGCACGTTGTTCCTCTATCAGACTCCAGTTGCCATCTTCAATTTAAGAACTGCTCGAAGTAGTTAA 3183 0.42 MPSSSNSKQKKKQSKAQLQNSPLSSNTTITPSRTQPQQPQEHASLCVEASRKFPSLIAESAFVAEIIHVDDTVPLFKGFRIWLSEPSMLSSSLSPGSIVSVSVPSSDEKNSQLHSFPLVSLANECAKCNGLEIGKAVDDYVAGNYFVLATVFPASKVLKNGVRLSSNLYYTMGCPPMGTSVFVCALQKQLLPTPASESNQQHYMENNRLPINNCKKLYLQLVPSKKGLPLKFNSFPSLDVSKVKSHVQFENDTVGSPATPSYGSKFSNASGLSSPQFDDSASSVPNHKSQSLISSDVSLALRDENSKQLLETWATSWLYSRSLLLGNLVSVPMFSECFFQVIGAKKQSVTKSDHYPSNGSSDLYPEDSDIADSVNQAFTVNYETKVFLSLPSNTASEEPIQRDIHCVKLDHKVGNASLPDRISKLGGLSKEYTLLKDIISSSLNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVKFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILLTLLNEMDHCLSEVQIQHLATVTHGFVGADLAALCNEAALNCLRHYASFKKTYDSCSNYITDKPVLVNGVTNSIDHLDEATSSISDLSATSPVLRPCRIRTTYETTEIIPESVEEEQILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVEMDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLRKIPCGSDVNLRELALLTDGCTGADISLICREAAVAAIEESLDASVITMKHLKIPIDRIQRSDVHSYQKLSTKFQRAVHSCYMKDELNDTQCDTKPIQFNVWKFIKSCTLFLYQTPVAIFNLRTARSS* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01633 1060 SMART AAA_5 454 590 IPR003593 GO:0016887
Phac1g01633 1060 SMART AAA_5 782 920 IPR003593 GO:0016887
Phac1g01633 1060 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Phac1g01633 1060 Pfam ATPase family associated with various cellular activities (AAA) 786 917 IPR003959 GO:0005524|GO:0016887
Phac1g01633 1060 FunFam calmodulin-interacting protein 111 isoform X1 743 918 - -
Phac1g01633 1060 FunFam spermatogenesis-associated protein 5-like protein 1 919 1001 - -
Phac1g01633 1060 FunFam Putative vesicular transport protein (CDC48) 409 587 - -
Phac1g01633 1060 PANTHER AAA-FAMILY ATPASE 73 1007 - -
Phac1g01633 1060 Pfam AAA+ lid domain 612 643 IPR041569 -
Phac1g01633 1060 Pfam AAA+ lid domain 940 985 IPR041569 -
Phac1g01633 1060 ProSitePatterns AAA-protein family signature. 888 906 IPR003960 GO:0005524|GO:0016887
Phac1g01633 1060 Gene3D - 747 918 IPR027417 -
Phac1g01633 1060 FunFam Calmodulin-interacting protein 111 589 746 - -
Phac1g01633 1060 Gene3D - 406 587 IPR027417 -
Phac1g01633 1060 MobiDBLite consensus disorder prediction 1 43 - -
Phac1g01633 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 998 IPR027417 -
Phac1g01633 1060 Gene3D - 589 746 - -
Phac1g01633 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 658 IPR027417 -
Phac1g01633 1060 CDD RecA-like_CDC48_r2-like 757 916 - -
Phac1g01633 1060 Gene3D - 919 984 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01633 Phac-Chr1 24739228 24748517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01633 7 1046 Calmodulin-binding Proteins AT3G56690 53.283 0.0 978
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01633 - - vum:124834498 1793.86