Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01550 ATGGAAATTCAATTCCAACAACCAAACCTGCAGCATCAGAAATCAGGCATTGCAATCACCAAAGGTGGAAAGTTGAAAGGGAGAAGCAGAAGCAACAACACCAATAAATTTGTGGGGGTGAGACAAAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCATCACTCATGTGTCCTTGGATTCCCCTCTTGCTTCTCGAATTCGGAATCTTCTAAACAACAAAAAAGGAATGAAAAAACAGGAAGACGCTAATGCTAATAATGCACCAGCTCCAAGAGTAAGCAGCACTAGCACTGCTAGTACTAGTAGTACTACTACTAGTGCTAATAGTAATTCAAACAATGGCAATGACAACAATGACAAGTCTCTTTGTACCGTGACACCTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGACTTTGGGTCAGGTCAACAATCCAATGCTTCATGGGGTTTTGGAGCTGTCTTTGATCGTTTTCCTATCGCTCAGATATTGGATGTACCAAAGATTGATGATTGCCTCACTGATACAGCTGACTTGGAGCTTTCTGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAGGACTCCAGTGAAACTCTCTGGGATCTTCCTCCTTTATGCTCATTGTTCTGCTAA 834 0.4245 MEIQFQQPNLQHQKSGIAITKGGKLKGRSRSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGMKKQEDANANNAPAPRVSSTSTASTSSTTTSANSNSNNGNDNNDKSLCTVTPQSSNLFDDAYKPDLSNCREDFGSGQQSNASWGFGAVFDRFPIAQILDVPKIDDCLTDTADLELSEFERMKVERQISASLYAINGVQEYMETVQDSSETLWDLPPLCSLFC* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01550 277 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 243 - -
Phac1g01550 277 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Phac1g01550 277 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Phac1g01550 277 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 MobiDBLite consensus disorder prediction 116 165 - -
Phac1g01550 277 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 MobiDBLite consensus disorder prediction 126 165 - -
Phac1g01550 277 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Phac1g01550 277 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01550 Phac-Chr1 19600367 19601695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01550 10 277 AP2-EREBP Transcription Factor Family AT5G19790 43.321 8.04e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g01550 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01550 K09286 - gmx:100796898 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01550 1 19600367 19601695 Phac1g01550 1 19600367 19601695 ECH
Phac1g01550 1 19600367 19601695 Phac4g00993 4 14689081 14690592 PCT