Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01494 ATGAACCCTACGATGAACAACTCAGCGAGTTCAGAATCAGTGATAGAGATGGTAAAGGGTTCACATGAGTTCAAGGTAAAGGGATATTCTCTGGTGAAGGGTATTGGAGTGGGAAAATTTATTGCAAGTGAGACGTTCAATGTTGGAGGCTATGAATGGGCTATATACTTTTACCCAGATGGTATAGACACCCAAGAAAATGCAGCTGTTTATGTCTCGGCTTTCGTTGTGCTTGTTTCCAATGCAAATGATGTTCGTGCTAAGTTTGAATTGGTCATGCATGACCAAAGTGGGGACGATGAACACTTCGTCCTCGGTCACTTTAATGGCACCCTAGGGACTGACCCTTACACTCTATCAACAGGAGAAATGTGGGGGATTAGGCGTTTTTACAAACGTTTTCACCTTGAACACTCAACGTATCTCATAGATGATTGTCTACAAGTAAATTGCACTGTTGGGGTTTTGCCCACCACCCTAGATAATTCTATGATAATAGAGGTTCCTGAGTCTAGCATTGCAGTACATTTTGGGATGTTGTTTGAAGATGAAAAATCATCTGATGTTACTTTTTGTGTTGGAGGAAACAAATTTTATGCGCATAAGATTGTATTGGCAGCTAGATCAAGTGTGTTTAAAGCTCAGTTTTTCAATGAAACTGAGAAGGTTGATAGAGAGATACTTGTTAATGACATGGAACCTAAGGTTTTCAAGGCATTACTTCACTTTATTTATAAAGATACTCTTATAGAAGATGAAGAACTGCATTTCTCAGTGCCTTCAACCATGGCTTCTCTGTCAAAGTTGTATGTGACAAAGTTGCTGGCTGCTGCACACAAGTACCAATTACCAAGGCTAAAGTTGATGTGCCAATCTGTACTTTGCAAACATATATCTATAAAATCTGTTGCTCAAATTCTGATCATTTCTGATTGTTATGATGCCACCCAATTGAAGTCCATATGTCTGCAATTCTCAACAGAAAATCTTGAGGCTGTGCTGAAATCTCGTGGTTTCAAGCATCTTAAGAAAAAATGTCCACTCCTTCAATATGAACTGCTAAAGACTGTGGCAGCAGAAATTGAGTGTGTCAAATCTTCTCATGTTGACAGTGATGAAACACATGAGCCAAATGAAATAGAAACTGAAAGCACAAGTTATAATCCTTCCAGTGACGAAGAAAACCATCTGGGTTGGTAG 1200 0.3925 MNPTMNNSASSESVIEMVKGSHEFKVKGYSLVKGIGVGKFIASETFNVGGYEWAIYFYPDGIDTQENAAVYVSAFVVLVSNANDVRAKFELVMHDQSGDDEHFVLGHFNGTLGTDPYTLSTGEMWGIRRFYKRFHLEHSTYLIDDCLQVNCTVGVLPTTLDNSMIIEVPESSIAVHFGMLFEDEKSSDVTFCVGGNKFYAHKIVLAARSSVFKAQFFNETEKVDREILVNDMEPKVFKALLHFIYKDTLIEDEELHFSVPSTMASLSKLYVTKLLAAAHKYQLPRLKLMCQSVLCKHISIKSVAQILIISDCYDATQLKSICLQFSTENLEAVLKSRGFKHLKKKCPLLQYELLKTVAAEIECVKSSHVDSDETHEPNEIETESTSYNPSSDEENHLGW* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01494 399 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 17 156 IPR008974 GO:0005515
Phac1g01494 399 SUPERFAMILY TRAF domain-like 17 159 - -
Phac1g01494 399 MobiDBLite consensus disorder prediction 368 399 - -
Phac1g01494 399 ProSiteProfiles MATH/TRAF domain profile. 19 153 IPR002083 GO:0005515
Phac1g01494 399 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 10 352 IPR045005 GO:0016567
Phac1g01494 399 SMART BTB_4 187 298 IPR000210 GO:0005515
Phac1g01494 399 CDD BTB_POZ_BPM_plant 173 295 - -
Phac1g01494 399 ProSiteProfiles BTB domain profile. 187 253 IPR000210 GO:0005515
Phac1g01494 399 CDD MATH 20 153 IPR002083 GO:0005515
Phac1g01494 399 Gene3D Potassium Channel Kv1.1; Chain A 162 292 IPR011333 -
Phac1g01494 399 Pfam BTB/POZ domain 179 297 IPR000210 GO:0005515
Phac1g01494 399 SUPERFAMILY POZ domain 164 298 IPR011333 -
Phac1g01494 399 Gene3D - 298 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01494 Phac-Chr1 18477329 18478811 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phac1g01494 BTB 5.6e-27 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01494 K10523 - gmx:100809683 437.958