Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01390 ATGGGGAAGAAGCGAAAGGCAGCACCCAAATCTTCTCAATCCGCTGAGCCTCCGCTCAAGCTTCACCAACCTGAACCCCAAATTGCGCCACCCGAGTACGAGGAAGTCGAAGAGGAAGAAGAGGAGGTAGAAGAAGTAGAAGAGGAAGTAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGACGATCAAGAACAACAACAACAACAAGACGACGACGACGACCCGATCGAGAAGCTTTTGGAACCTTTAAGCAAGGAACAGATCGTGAACCTTCTTAGCGAGGCGGCGGCAAATCACCGCGACGTGGCGGACCGGATCCGCAAGGCCGCTAACGAGGATCCCGTGCACAGGAAGATCTTTGTTCACGGGTTGGGGTGGGACACCACAGCGGGAACCCTAATCAGTGCGTTCCGGCAGTACGGAGAGATCGAGGACTGCAAGGCCGTAACCGATAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACGCGGCGCGGCGCGCGCAACGCTCTCAAGGAGCCGCAGAAGAAGATCGGCAACCGTATGACAGCGTGCCAGCTGGCGTCCATCGGCCCCGTCAGTGGCAGCCAGAGCCAGCCGCAGGCATTGCCTTCCTCGGCGCCGGTGCTGTCATCGTCGGGTTCGGAGTACACGCAGAGGAAGATCTACGTGAGCAACGTCGGTGCGGAACTCGATCCGCAGAAGCTTCTGGCGTTCTTTTCACGGTTCGGGGAAATTGAGGAGGGACCTTTGGGGCTGGATAAGCTAACCGGAAAACCGAAAGGGTTTTGTTTGTTTGTTTACAGGAGTGCGGAGAGTGCGAGGAGAGCCTTGGAGGAGCCTCATAAGGACTTTGAGGGGCATATTTTGCACTGCCAGAAGGCGATTGATGGGCCCAAGCCTGGGAAGTTGCAACAGCAGCAACACGGGAATGTAAATGCCCAGGCCCAGCGGACCCAGTATCAGAGGAATGATACTGCCAATACAGGTGGTGCGTATGTTGGTGGTGCTGCGGCAGCACAGCCGGGGCACTTGATGGCTCCAGCTGGGCCAGGGATTGGGTTTAACCAGGCAACGTTGAATCCGGCATTGGGGCAGGCGTTGACGGCCCTCCTGGCGTCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCGGTGAACCCTGGTGTGCCTGCTTCGGGGGCTGGAGTACAGAGTGGTTACAGTGCTCAGTCAAATATTAGTCCCGGTGTCATTGGAGGATATGGGACCCAGGTGGGCTTGCAGGCTTCATATCCGAATCAGAATCAGCAGATAGGGCAGGGTGGTTCTGGAAGAGGGCAATATGGTAGTGGTGGTGCGCCTTACATGGGGCATTAG 1404 0.5662 MGKKRKAAPKSSQSAEPPLKLHQPEPQIAPPEYEEVEEEEEEVEEVEEEVEEEEEEEEEEEEEEDDQEQQQQQDDDDDPIEKLLEPLSKEQIVNLLSEAAANHRDVADRIRKAANEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIGPVSGSQSQPQALPSSAPVLSSSGSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRSAESARRALEEPHKDFEGHILHCQKAIDGPKPGKLQQQQHGNVNAQAQRTQYQRNDTANTGGAYVGGAAAAQPGHLMAPAGPGIGFNQATLNPALGQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPASGAGVQSGYSAQSNISPGVIGGYGTQVGLQASYPNQNQQIGQGGSGRGQYGSGGAPYMGH* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01390 467 MobiDBLite consensus disorder prediction 200 220 - -
Phac1g01390 467 SUPERFAMILY RNA-binding domain, RBD 113 203 IPR035979 GO:0003676
Phac1g01390 467 MobiDBLite consensus disorder prediction 1 79 - -
Phac1g01390 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 317 IPR000504 GO:0003723
Phac1g01390 467 FunFam UBP1-associated protein 2A 214 345 - -
Phac1g01390 467 Gene3D - 204 341 IPR012677 -
Phac1g01390 467 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 28 314 - -
Phac1g01390 467 MobiDBLite consensus disorder prediction 442 467 - -
Phac1g01390 467 Gene3D - 31 202 IPR012677 -
Phac1g01390 467 FunFam UBP1-associated protein 2A 114 198 - -
Phac1g01390 467 Coils Coil 33 74 - -
Phac1g01390 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Phac1g01390 467 MobiDBLite consensus disorder prediction 31 79 - -
Phac1g01390 467 SMART rrm1_1 229 301 IPR000504 GO:0003723
Phac1g01390 467 SMART rrm1_1 122 194 IPR000504 GO:0003723
Phac1g01390 467 SUPERFAMILY RNA-binding domain, RBD 213 326 IPR035979 GO:0003676
Phac1g01390 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 297 IPR000504 GO:0003723
Phac1g01390 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01390 Phac-Chr1 16283568 16289508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01390 215 316 C2H2 Transcription Factor Family AT2G19380 33.333 5.41e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01390 K12741 - gmx:100784200 631.713