Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g01367 | ATGAGTTTTCAAGACATCCAAGGTGGGCCCCACCCTCCCTCTCGCCGGAGCCAGTCACCGGCGCAGGCCGTCGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGCCACTTTCCGGCGGCTCGTTGATGCCCTCGGAACCGTTAAAGACACTTCCGAACACCGTCAGAAACTGCACAATACGAGGCAGAGGATATTGCAACAGGTGAAGGATACTTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGATGCTAATTCCAATGCTAGTCAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTCAAACGACATTGCAAGAGTTTCAGAAAGTACAGCAGCTTGCCTCTGAGCGTGAATTGGCTTACACCCCTGCCTCCCCGTCTTCTACTTTACCAATAAGCTCTGGCTCTGGTGAAGAATCGACTGGAATAGATGTTGAAAGTCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTAGATAATGAAATATCATTCAACGAGGCCATGATTGATGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAACTAGCCAAGGCTTCTAAAAGTGTAAAATCCAGAACCTCATGGCAAACCTAG | 744 | 0.4583 | MSFQDIQGGPHPPSRRSQSPAQAVAAGIFQINTAVATFRRLVDALGTVKDTSEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRDANSNASQKIEDAKLARDFQTTLQEFQKVQQLASERELAYTPASPSSTLPISSGSGEESTGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKSRTSWQT* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g01367 | 247 | Gene3D | - | 177 | 245 | - | - | |
| Phac1g01367 | 247 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Phac1g01367 | 247 | CDD | SNARE_Qa | 176 | 234 | - | - | |
| Phac1g01367 | 247 | Pfam | Syntaxin-like protein | 25 | 123 | IPR006011 | GO:0016020 | |
| Phac1g01367 | 247 | SUPERFAMILY | t-snare proteins | 19 | 228 | IPR010989 | GO:0016020|GO:0016192 | |
| Phac1g01367 | 247 | PANTHER | SYNTAXIN | 21 | 241 | IPR045242 | - | |
| Phac1g01367 | 247 | MobiDBLite | consensus disorder prediction | 122 | 147 | - | - | |
| Phac1g01367 | 247 | SMART | tSNARE_6 | 168 | 235 | IPR000727 | - | |
| Phac1g01367 | 247 | FunFam | Syntaxin-22 like | 15 | 128 | - | - | |
| Phac1g01367 | 247 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 173 | 235 | IPR000727 | - | |
| Phac1g01367 | 247 | MobiDBLite | consensus disorder prediction | 124 | 146 | - | - | |
| Phac1g01367 | 247 | Gene3D | - | 12 | 129 | - | - | |
| Phac1g01367 | 247 | SMART | SynN_4 | 8 | 122 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g01367 | Phac-Chr1 | 15540972 | 15544133 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g01367 | 1 | 245 | SNARE and Associated Proteins | AT5G46860 | 58.233 | 2.92e-92 | 271 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g01367 | - | - | gmx:100787141 | 413.305 |