Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01271 ATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTCCTAGGTCAACCACTGATGGTAAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAACAGCTGTTGCTAATGGATCCACTGGACTTATCGGTCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGAAATTTGCATATCAGTATGAGTGAAGCTGATATTCGTAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCACTTGATGAAAGTGGGCACTGTAAAGGTTTTGGCTTTGTACAGAACTTCCCTATGGACTCAATGGAGTCATGA 327 0.4495 MSVPMAIALSGQPLLGQPLMVKPSEAEKNLVQSTTAVANGSTGLIGPYSGGARRLYVGNLHISMSEADIRKVFEAFGQVELVQLPLDESGHCKGFGFVQNFPMDSMES* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01271 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 99 IPR000504 GO:0003723
Phac1g01271 108 SUPERFAMILY RNA-binding domain, RBD 51 99 IPR035979 GO:0003676
Phac1g01271 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 108 IPR000504 GO:0003723
Phac1g01271 108 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 99 IPR006509 GO:0003723|GO:0005634|GO:0006397
Phac1g01271 108 Gene3D - 32 101 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01271 Phac-Chr1 13640537 13641123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01271 55 98 Eukaryotic Initiation Factors Gene Family AT3G16380 45.455 3.70e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01271 K13091 - gmx:100795336 187.963