Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01241 ATGGATTGGGACGGGAAAGAGTTTGCCCGGGATCCACGTGGGTTGGAGCTGGCTAATGGTGAAGGACAGAGGAATGAAGCTGCTTCGGTGGATTTGAGGCTTGGTGAGGAAAAATCAGTTCCAGATGTTGCTAAGGACCCAAGAGACTCCAAAACTGTGTCTTCACCATCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGCTGTTCTGTTGATGGATGCAGCTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAAACCCCAGTTGTGTTGGTGGGGGGGAAGCAACAACGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCAGGAGGAAACCTCAGCCTCCCTCTCTTTTCATGGCTACTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCATTTTGGGAGCCCGGAGACCTATGTCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCTAAAACTGGAGCTGAATCTGGTTATGATCCACCTCGACTGTTATACAGAATTGACAAGCACAAGCAAGACAAGGGACATCCTCTTTGGCAAGAAAATGATCCGACAGTAGGCAATGGTAATGAAGCAATGCTTGAAACTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCAACCGGTGGAAAGAGCAGCCGAAAGCACTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGCCCAGAGTCGAGTATGGTGCAATCTAGCATCACCTGTCCAATGCAATCTCCATCAGGATCTGTGCATTTTGATACTGTGAATGAATATGCGTATTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTATTGGTTCTTGATTCAAACACCACCAACCTTCATTACAATGGAATGCTGCAAATGGGGCTCGATGGTTTGGTTGAAAATGACGACCCACTGACACTTCCCTTCTTGTGGGAGTAG 1095 0.4694 MDWDGKEFARDPRGLELANGEGQRNEAASVDLRLGEEKSVPDVAKDPRDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMATEKFMYNYKGPRILHFGSPETYVNPIMRSMWSATAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPTVGNGNEAMLETPICQPIHGTITPSTGGKSSRKHSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSITCPMQSPSGSVHFDTVNEYAYSETEKDKPSGQVLVLDSNTTNLHYNGMLQMGLDGLVENDDPLTLPFLWE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01241 364 MobiDBLite consensus disorder prediction 1 69 - -
Phac1g01241 364 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Phac1g01241 364 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Phac1g01241 364 MobiDBLite consensus disorder prediction 30 49 - -
Phac1g01241 364 MobiDBLite consensus disorder prediction 50 69 - -
Phac1g01241 364 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Phac1g01241 364 MobiDBLite consensus disorder prediction 245 265 - -
Phac1g01241 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 299 IPR044817 GO:0003677
Phac1g01241 364 Pfam SBP domain 74 147 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01241 Phac-Chr1 13195549 13199628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01241 74 172 SBP-box Gene Family AT5G50670 65.657 1.59e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac1g01241 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01241 - - gmx:100798317 673.315