Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01187 ATGGCAGACCCAACAGCCATGTATGAGTTCCTCAAGCAGCCCTCAAATGCTGGTGTAAAGAGACCACTACCACCACCCTCCACCACCACCAACACCGCAGCCACCACACGCACCTTCCAATGCCACTTCTGCCACCGCAAGTTCTACACCTCGCAAGCCCTCGGCGGCCACCAAAACGCTCACAAGCTGGAGCGAGCCGCCGCGAGGAGACAAACCAACGGGCTTCTCCCGCCGCCCCCGCTGCCTCTGGAGCCTACTCTCAAGCCAACCGAAACCAGGCCCATGCTGGAGCCACTGGAGCCCACCACCGGGCTCTTCTTCCACCCTCCCTACTGGCTCGATATGGAGCCCCTGCAGTTCCAAACCACCCACCCTTACGTGACCGCCGCCACCCTTCCCGTTCCGTTCCACGCCGCGTCTTCCACCGTACCCCAACAACAACAACAACAAGTCCTTTCCCACAATGTTGACGCTTCCGACCACGTCAACATCGACCTCACTCTCCGCTTGTGA 513 0.6043 MADPTAMYEFLKQPSNAGVKRPLPPPSTTTNTAATTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRQTNGLLPPPPLPLEPTLKPTETRPMLEPLEPTTGLFFHPPYWLDMEPLQFQTTHPYVTAATLPVPFHAASSTVPQQQQQQVLSHNVDASDHVNIDLTLRL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01187 170 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
Phac1g01187 170 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Phac1g01187 170 Gene3D Classic Zinc Finger 25 75 - -
Phac1g01187 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Phac1g01187 170 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 74 IPR044246 GO:0009788
Phac1g01187 170 MobiDBLite consensus disorder prediction 12 32 - -
Phac1g01187 170 MobiDBLite consensus disorder prediction 72 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01187 Phac-Chr1 12125780 12126292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01187 34 81 C2H2 Transcription Factor Family AT5G14010 66.667 3.86e-15 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac1g01187 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01187 - - vra:106758350 264.618