Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01153 ATGATGGAGGGCTACACGCTTCCCGCACCACCCACTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCATGGGTGCCCCTCTTACCTTTAAATCCATGCTTCAACAACAACCTCAACCACAACAACCACAACTTGACTCCTTCTTCAACTTCAACATCAACTCTGCAACTTCCATTCCCTTTGTTCCTAGTATGGAATCTTTTCCCCCTCTAGACCCCTTCTCACCTTCACTTCCACCACCTCCTTTCTTCAACACCAACACCAACACCTTGCCCTTTGACCCGGGCTTTGACATGGGCCTCGACACTGGGCTTCACTCTTCATGTCCCCCTCTTTTCTCCCAGCTTCAGCAGGGCTTCGAGTTTGGAGAACTGGAAGCGCTGACTGCACCTGGGAATGTTCCGTTTTTGGACGGAGCCAAAGGGGACAACCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGGGGAGGAAGGGAGTAGTGCTGACGTGGATGGTTCAGGGCTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGAAGTGAGAATGGTGGAGATCACAAGGGGAAAAGAAAGGGGTTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTGGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATACCGAACTGGAAATGACTCCGGCGGGCTCGTCGCTGCCACCATCTACTTCTACAAGCTTTCAGCCTCTAACCCCCACCCTGCCAACCCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTGAGAGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGACAACCTTGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAGGCTGAGCAATGCAGAGAAGGCCAGGATGTTCTTCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCAGGCTTTCATGGTATGATGTGA 1284 0.5156 MMEGYTLPAPPTEEDAPPPSWGRPNSQEEDIAIAMGAPLTFKSMLQQQPQPQQPQLDSFFNFNINSATSIPFVPSMESFPPLDPFSPSLPPPPFFNTNTNTLPFDPGFDMGLDTGLHSSCPPLFSQLQQGFEFGELEALTAPGNVPFLDGAKGDNPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDENDNGNNGLKGSENGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELEMTPAGSSLPPSTSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01153 427 MobiDBLite consensus disorder prediction 168 193 - -
Phac1g01153 427 Pfam Helix-loop-helix DNA-binding domain 241 283 IPR011598 GO:0046983
Phac1g01153 427 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 103 423 - -
Phac1g01153 427 SMART finulus 240 289 IPR011598 GO:0046983
Phac1g01153 427 Gene3D - 228 298 IPR036638 GO:0046983
Phac1g01153 427 MobiDBLite consensus disorder prediction 1 29 - -
Phac1g01153 427 MobiDBLite consensus disorder prediction 168 245 - -
Phac1g01153 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 308 IPR036638 GO:0046983
Phac1g01153 427 MobiDBLite consensus disorder prediction 224 245 - -
Phac1g01153 427 FunFam BHLH transcription factor 230 298 - -
Phac1g01153 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Phac1g01153 427 CDD ACT_UUR-ACR-like 356 397 - -
Phac1g01153 427 CDD bHLH_AtAMS_like 237 300 - -
Phac1g01153 427 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01153 Phac-Chr1 11528671 11532651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01153 135 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.580 6.34e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac1g01153 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01153 - - vun:114162308 653.284