LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac1g01148	ATGTCCATCTTGCCCTCACAAACCCAAGCATCATCTTCCTCCTCTTCATCTGCGCCATCTCCTAACCCTAATCCCCAACATGGCATCGGAATCCCAATTCCTCAACAACCCTTCACTTATCTCTCACCCCCACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATATCCCAGGTTCATCGACTCAAGCTGCTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAAGGTCTCCAAGTGGAGTGACGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGATTCCCGGAGGAAGACGGGCAGGAATGGTTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGAGTTCTCATGGAAGTTCCCCTTTGGCAGGGAGAAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCCCCTCCTCCCCCTGCAACAAGAAGGAATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCAGGAAATTATTCTCCTGAGTCAATGGATCCTGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCATTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCGTGTATTCTACAGTACTTAATGATGGGTGAAGAGGATCACAAAGGCGATATCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGACATCTGCCAAGGATTTATATACAGTGCACATCACTAATGTTAAACAATATCAAGTAGGAGATAATGTTGAGTTCACCTTTTTAACTCGGAAAAAGGATTCATTTACTCCGTCAAATAAACAAGAGACAAATATCACATCATGTGGTAATGGACATTTCTGTGATCCCTTTTCTAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCATTCAATATCAGATCTAGATGGTTGGCTTGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAACTGGAACAGAGGAAGAGGTATTGGAATGAGCAGAAGTGTAATGACAGCGAAAATTCTAAGCCTATTGATCTTGGACATCAGATACCATCCATGGCTACAAATTCTATGGATGCTGATGATGAAAATCGTTCTAATGGGTCAAGAACTTCCTCTACTGATTACCATGACCAAATTAAGGTTACGATGCTGGATAAGTCAACTGCTGGAGCCTGTTCAGACCAAACTTTGAATGTGGAGAAAGAATCAATAGAGCAACAAATGAATTTATGTTCTTCATATGAGGAGAAGAAGAATAGTATTCAAAGGCCTGCAGATGATGGTGATGTTGAAGAAGTGAAGGGAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAACATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTCCACCATTATGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTAGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCTCCTGAAGCACTGACTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGGAAGCAACTTGCAAAAAAGGAACGGAAGGAAAAAATAAGGGCTGAAGCTACAGATACTTATTCCCTTCCTATATCATTAAGTAGTCGGCTTACATCTCATGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTATCCTCAAGTACTCCCGTAGCCGGGGAGAAAAAATCGTTCTCAAATGTCACAAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAATATCAATGCTACAACTGATTCCTCTGCCACAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAACATAAGCTCCAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAGAAGCCAAGTCGAGTTCTTCTGTCCACAGCTGGAGGTAGACGTTATTGA	2226	0.4214	MSILPSQTQASSSSSSSAPSPNPNPQHGIGIPIPQQPFTYLSPPLHHALGSLQISDIPGSSTQAAEDSGGSSEKVTELRSPSGVTVSPQQNSRTRSRIPGGRRAGMVSHRNQQAPGSVSSHGSSPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPATRRNWKRKPYNKDLFLQANYKFMVLDSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGDNVEFTFLTRKKDSFTPSNKQETNITSCGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEQKCNDSENSKPIDLGHQIPSMATNSMDADDENRSNGSRTSSTDYHDQIKVTMLDKSTAGACSDQTLNVEKESIEQQMNLCSSYEEKKNSIQRPADDGDVEEVKGNDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALTPFMDEIKKRANQRKQLAKKERKEKIRAEATDTYSLPISLSSRLTSHDDPPTFSMDDFEALGNSTVSSSTPVAGEKKSFSNVTRLGFAAAHDSPSLQIQETSGLHNINATTDSSATTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKPSRVLLSTAGGRRY*	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	673	719	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	673	741	-	-
	Phac1g01148	741	SUPERFAMILY	RING/U-box	218	269	-	-
	Phac1g01148	741	PANTHER	RING FINGER 10 FAMILY MEMBER	67	741	IPR039739	-
	Phac1g01148	741	SMART	ring_2	219	265	IPR001841	-
	Phac1g01148	741	Pfam	Zinc finger, C3HC4 type (RING finger)	219	265	IPR018957	GO:0046872
	Phac1g01148	741	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	212	298	IPR013083	-
	Phac1g01148	741	ProSiteProfiles	Zinc finger RING-type profile.	219	265	IPR001841	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	1	24	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	110	129	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	145	166	-	-
	Phac1g01148	741	ProSitePatterns	Zinc finger RING-type signature.	234	243	IPR017907	-
	Phac1g01148	741	FunFam	RING finger protein 10	212	280	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	384	427	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	1	129	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	54	97	-	-
	Phac1g01148	741	Coils	Coil	577	601	-	-
	Phac1g01148	741	CDD	RING-HC_RNF10	217	274	-	-
	Phac1g01148	741	MobiDBLite	consensus disorder prediction	392	412	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac1g01148	116	692	C3H Transcription Factor Family	AT3G26730	54.790	0.0	622

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac1g01148	K26979		-	gmx:100798764	1206.05

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phac1g01148	1	11473442	11483690	Phac1g01148	1	11473442	11483690	ECH