Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01116 ATGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCTGCTGAGATTGAGAAGAGGAAACACAAACTCAAGCGTCTTGTTCAGTCCCCAAACTCTTTCTTCATGGATGTTAAGTGTCAGGGTTGCTTTAACATAACGACTGTGTTTAGCCACTCTCAGACTGTTGTTGTATGTGGGAATTGCCAGACTGTCTTGTGCCAGCCAACCGGGGGACGGGCAAGGCTAACTGAGGGATGCTCCTTTAGGAAGAAGGGAGACTGA 261 0.4559 MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01116 86 Gene3D - 5 85 IPR023407 -
Phac1g01116 86 FunFam 40S ribosomal protein S27 1 86 - -
Phac1g01116 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Phac1g01116 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Phac1g01116 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Phac1g01116 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Phac1g01116 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01116 Phac-Chr1 10870593 10871992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01116 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 1.66e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01116 K02978 - minc:123230388 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g01116 1 10870593 10871992 Phac1g01116 1 10870593 10871992 ECH