Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01040 ATGCAAAATTTTGGCTTGAATAAAGCTACAGGATATGACGGCGATAACATAGCTGAAATAGGAAAAAGCATTGGAAGGTACATTATACCATACTTTATAATACGATTTCTATTTGGTGTGGTAGCTTTTGTTGTGTTGTTAATGTATAAATGGGGAAGAAGACATAAATCAAAGTATGAAAATATTGAAGCTTTTCTACAAGAAAACACTCTCATGCCAATAAGATACTCATATAAAGAAATAAAGCACATGAGTAGGGGTTTTAAGGAAAAGCTAGGTCAAGGAGGATTTGGCTTGGTATACAAAGGAAAGTTGCGTAGTGGATCATTTGTTGCGATAAAGATGTTGAGTAAATCAAAGTCTAATGGCCAAGATTTCATCAGTGAAGTTGGTACTATTGGAACAATACATCATACAAATGTGGTGCGACTTATTGGATTTTGTGTTGAATCATCAAATCGCGCTCTTGTTTATGAATTCATGCCTAATGGTTCTCTTGATAAATATATCTTCTCCAAACAAGATAGTGTCTCTTTAACTCAGAGACAAATATATGAGATATCTCTTGGAGTGGCTCATGGAATTGCTTATTTGCATGAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAGCCACATAACATCCTTCTAGACGAAAACTTTATCCCAAAGGTTTCAGACTTTGGCTTGGCAAGGCTTTATCCTATAGACAAAAGTATTATCACTTTGACTGATGCAAGGGGAACACTTGGATACATGGCCCCTGAGTTATTTTATCATAATATGGGGAGAATATCACACAAATCAGATGTTTATAGTTTTGGAATGCTTTTGATGGAAATGGCAAATAAAAAAAGAAATTTTAATCCACATGCAGATGATTCAATTGAACTTTTTTTTCCTTTTTGGATATACAATGAATTGAGTGGAGAAAATGAGATAGAAGAGGAGAGTGTTAGCAAGCAGGAATACAATAATGAGATAAAGAAGATGTTTTTAGTAGCATTATGGTGTATACAATCGAAACCAAGTGATCGTCCTCCAATGAACAAAGTAGTGGAGATGTTGGAAGGAGAACTTGAGAACATTGAAATGCCTCCAAAACCTTTCCTATATCAGGTAAATGATCATAATATTAAATCTTTCCAAACACTTTCAAATGATTCTAGTGGATCAACAAGTTATACTGGGGAAAATACTGTTCATTCTACTTGA 1218 0.3415 MQNFGLNKATGYDGDNIAEIGKSIGRYIIPYFIIRFLFGVVAFVVLLMYKWGRRHKSKYENIEAFLQENTLMPIRYSYKEIKHMSRGFKEKLGQGGFGLVYKGKLRSGSFVAIKMLSKSKSNGQDFISEVGTIGTIHHTNVVRLIGFCVESSNRALVYEFMPNGSLDKYIFSKQDSVSLTQRQIYEISLGVAHGIAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLARLYPIDKSIITLTDARGTLGYMAPELFYHNMGRISHKSDVYSFGMLLMEMANKKRNFNPHADDSIELFFPFWIYNELSGENEIEEESVSKQEYNNEIKKMFLVALWCIQSKPSDRPPMNKVVEMLEGELENIEMPPKPFLYQVNDHNIKSFQTLSNDSSGSTSYTGENTVHST* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01040 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Phac1g01040 405 SMART serkin_6 86 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01040 405 Gene3D Phosphorylase Kinase; domain 1 60 160 - -
Phac1g01040 405 MobiDBLite consensus disorder prediction 384 405 - -
Phac1g01040 405 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
Phac1g01040 405 PANTHER RUST RESISTANCE KINASE LR10-RELATED 58 379 IPR045874 GO:0004672
Phac1g01040 405 FunFam serine/threonine-protein kinase PBS1-like 54 160 - -
Phac1g01040 405 Gene3D Transferase(Phosphotransferase) domain 1 161 368 - -
Phac1g01040 405 ProSiteProfiles Protein kinase domain profile. 86 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01040 405 CDD STKc_IRAK 92 359 - -
Phac1g01040 405 FunFam PR5-like receptor kinase 161 369 - -
Phac1g01040 405 Pfam Protein kinase domain 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac1g01040 405 SUPERFAMILY Protein kinase-like (PK-like) 71 358 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01040 Phac-Chr1 9793989 9797839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01040 37 402 Receptor kinase-like Gene Family AT1G66910 44.681 6.96e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phac1g01040 Pkinase 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01040 - - pvu:PHAVU_001G075800g 745.347