Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01003 ATGAGAGTTTCGGCTCAGAATAATAATTCTGGGAAGGAGAGCAGCTCGACCTCGCCGTCGGAGGCGGCGGCGCCGTTAGAGTCGAAAACGGAGAAGCGAAACCGGGAATCAAACAAGCATCCGGTGTACCGAGGGGTGCGAATGCGGAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCCACGCCGGAAATGGCGGCTAGGGCGCATGACGTTGCAGCGCTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCGCCTCGCTTCCTCGTCCCGTGTCATTGGCCCCTCGTGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACATGGACTTCCCTCCTTCGTCCACGTCATTATCATCATCATCATCATCGTTGGTCTCAGCAACTTCCTCCTCCTCGTCTTTATCCTCGTTGGTTTCAACCGCGGACTTGTCCACTGAGTCGGAAGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAACGAGTTTGTGTTCGCGGACTCGCAGGACACGTGGATGTACCAGCCACCGATACCTTGGTTGCAAACCACGTACGATGCTTCTCATGCCGATGATGATATTGCAGTGGCAGAGACTGGGCTTGTCACTACTTTTAAGAGTTTTCTGTGGGATTACTGA 711 0.5513 MRVSAQNNNSGKESSSTSPSEAAAPLESKTEKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAASLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSLSSSSSSLVSATSSSSSLSSLVSTADLSTESEELSQIIELPRLETSYELGNEFVFADSQDTWMYQPPIPWLQTTYDASHADDDIAVAETGLVTTFKSFLWDY* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01003 236 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Phac1g01003 236 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Phac1g01003 236 MobiDBLite consensus disorder prediction 1 42 - -
Phac1g01003 236 FunFam Ethylene-responsive transcription factor 2 41 100 - -
Phac1g01003 236 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 184 - -
Phac1g01003 236 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Phac1g01003 236 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Phac1g01003 236 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Phac1g01003 236 MobiDBLite consensus disorder prediction 26 42 - -
Phac1g01003 236 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Phac1g01003 236 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Phac1g01003 236 MobiDBLite consensus disorder prediction 1 24 - -
Phac1g01003 236 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01003 Phac-Chr1 9288306 9290004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01003 13 210 AP2-EREBP Transcription Factor Family AT5G11590 65.686 2.70e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phac1g01003 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01003 K09286 - gmx:100305349 321.242