Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g01002 ATGTTCATACACGCGCTAAAACCTCTTACAATGAGAGTTTCGGCTCAGAATAATAATTCTGGGAAGGAGAGCAGCTCGACCTCGCCGTCGGAGGCGGCGGCGCCGTTAGAGTCGAAAACGGAGAAGCGAAACCGGGAATCAAACAAGCATCCGGTGTACCGAGGGGTGCGAATGCGGAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCGAGAATATGGCTGGGGACATTCCCCACGCCGGAAATGGCGGCTAGGGCGCATGACGTTGCAGCGCTGAGCATAAAGGGGAACAGCGCCATCCTCAACTTCCCCGAACTCGCCGCCTCGCTTCCTCGTCCCGTGTCATTGGCCCCTCGTGACGTGCAAGCCGCAGCGGCCAAAGCGGCTCACATGGACTTCCCTCCTTCGTCCACGTCATTATCATCATCATCATCATCGTTGGTCTCAGCAACTTCCTCCTCCTCGTCTTTATCCTCGTTGGTTTCAACCGCGGACTTGTCCACTGAGTCGGAAGAACTGAGCCAGATCATCGAGTTGCCGAGGTTGGAAACGAGTTACGAGTTGGGAAACGAGTTTGTGTTCGCGGACTCGCAGGACACGTGGATGTACCAGCCACCGATACCTTGGTTGCAAACCACGTACGATGCTTCTCATGCCGATGATGATATTGCAGTGGCAGAGACTGGGCTTGTCACTACTTTTAAGAGTTTTCTGTGGGATTACTGA 741 0.5452 MFIHALKPLTMRVSAQNNNSGKESSSTSPSEAAAPLESKTEKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELAASLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSLSSSSSSLVSATSSSSSLSSLVSTADLSTESEELSQIIELPRLETSYELGNEFVFADSQDTWMYQPPIPWLQTTYDASHADDDIAVAETGLVTTFKSFLWDY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g01002 246 MobiDBLite consensus disorder prediction 15 51 - -
Phac1g01002 246 MobiDBLite consensus disorder prediction 15 34 - -
Phac1g01002 246 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Phac1g01002 246 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Phac1g01002 246 MobiDBLite consensus disorder prediction 36 51 - -
Phac1g01002 246 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 30 194 - -
Phac1g01002 246 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Phac1g01002 246 FunFam Ethylene-responsive transcription factor 2 51 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g01002 Phac-Chr1 9288306 9290004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g01002 23 220 AP2-EREBP Transcription Factor Family AT5G11590 65.686 5.26e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac1g01002 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g01002 K09286 - gmx:100816404 327.791