Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00995 ATGCTTTGGAGCATCATCACTGGTGGCATGATCTCAATTTTCAGGAACATGCCTTTCAAGAACCATTTACCAGTGTTCATCATGATGGTTCTTTCTTTCATTTCTAATGTTGAAGCACAATACAGTGACACAGATACCATGCAAGATTTCCCTCAACCAGTTCGTCCAAGCAAGATGGTTGTAATAGTGGCCCTCTCAATATTGTTCACTATATCATTTATCTTACTTGTCTATATAAGGTTCTGCAGAACCACCCCTCTTGAGCTTGTCAACAGAAGGAACCTTCATTCACCCAATTTTCAAGCACTAACTGAGTCAAGATCAAGGAATTCAGGGATAGACAAAAAAGTGATAGAAGCACTCCCATTTTTCATGTTCTCTTCCCTTAAGGGGTCCAAACAAGGCCTAGATTGCACAGTTTGCTTGTCACAGTTTGAGGACACCGAGATTCTTAGACTCCTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGTCACGCTACGTGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCAACTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAGCCTTCGCATCAAGGGTCATCATCATCAAGGTTTAACATCGGAAGCAGGTTTTGGAATTTGAGCAGCAGCAGCAGCAGAAAAAAGCTTCTCGTTGACCAAGAGGTTTCTGGTACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTTAACTCTTCGGACATGTTATCATTGAAGAGTGAGATGATTCATCACGTTTCAACAGGAAGATTCTCTCCCTCTAATGAATTTTTTTGCGGAAATTCGAGCCTTTCCTCTATTTTCAATGGGGATGAAAGTTCATTGACATTATTGAATACAGCTGAGAAGAGATCTATGTCTGATATTGCTCATGTTCCAAGGTTCATAGAAACATGCGAGCAGAATAGAATGGAGCCAGGTGAGGCATCAAGTGGGAATAAGGAGAGGGAAGAGAGGATGAGAAGGGTTTGGTTGGATATTTCTCAGCGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAACTCAACAGATTTAGAGCTAAAACATTTAGCTCCGAATGTTTGA 1224 0.4118 MLWSIITGGMISIFRNMPFKNHLPVFIMMVLSFISNVEAQYSDTDTMQDFPQPVRPSKMVVIVALSILFTISFILLVYIRFCRTTPLELVNRRNLHSPNFQALTESRSRNSGIDKKVIEALPFFMFSSLKGSKQGLDCTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWFESHATCPLCRNNIDPLDIKNFNYSISSRSLRVPSNLTEDTNLEIFVHREPSHQGSSSSRFNIGSRFWNLSSSSSRKKLLVDQEVSGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLKSEMIHHVSTGRFSPSNEFFCGNSSLSSIFNGDESSLTLLNTAEKRSMSDIAHVPRFIETCEQNRMEPGEASSGNKEREERMRRVWLDISQRTVQWFAGQERNSTDLELKHLAPNV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00995 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 39 393 - -
Phac1g00995 407 SUPERFAMILY RING/U-box 133 186 - -
Phac1g00995 407 SMART ring_2 138 179 IPR001841 -
Phac1g00995 407 CDD RING-H2_EL5-like 137 180 - -
Phac1g00995 407 FunFam RING-H2 finger protein ATL43 113 187 - -
Phac1g00995 407 Pfam Ring finger domain 137 180 IPR001841 -
Phac1g00995 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Phac1g00995 407 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00995 Phac-Chr1 9191808 9193411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00995 49 395 C3H Transcription Factor Family AT4G28890 38.832 7.85e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00995 K10664 - gmx:100803881 553.518