Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00969 ATGGATCAACGTGAAGAAGGCAAACAACCATCCCAGAAAGCACCATCACACAACCCAGTTGATAGTTCTGACAATATTGCTCCAGAAAATGGTCTGCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCATTAGAAAGTGGAAGTGAGAGTGAGTCCTCTTATAATGACCGTGATGAGGATTCTGACTTTTTCCTGAGCCAAGAGTTTGAATCCGAACTTCAGTTTCTAGAGAGTGAAGGAAGCAATGAGGACGACGATGATGATGAAGATGATGATGAGGAGGAAATGGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGACTTTATAGGGCAAGAGAAGAGAGGGTTATCAGCAAATGAAATTTGTTCATGTCTGCATTCTCACACTTACCATTCTGCTGAAAGCAAAAGTGGAATAAATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCCTTGGTATCAATTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAGATGGTTAGTTAA 609 0.4122 MDQREEGKQPSQKAPSHNPVDSSDNIAPENGLQEQSGTFTTFASLESGSESESSYNDRDEDSDFFLSQEFESELQFLESEGSNEDDDDDEDDDEEEMEDEIDVDELTYEELIELGDFIGQEKRGLSANEICSCLHSHTYHSAESKSGINLCVICQVEYEEGEALVSIQCEHPYHTDCISKWLQIKKVCPICNTEISAPKMVS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00969 202 MobiDBLite consensus disorder prediction 1 101 - -
Phac1g00969 202 MobiDBLite consensus disorder prediction 78 101 - -
Phac1g00969 202 SUPERFAMILY RING/U-box 150 198 - -
Phac1g00969 202 Pfam RING-H2 zinc finger domain 150 192 IPR024766 GO:0008270
Phac1g00969 202 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 50 196 IPR033276 GO:0004842|GO:0016567|GO:0046621
Phac1g00969 202 MobiDBLite consensus disorder prediction 12 51 - -
Phac1g00969 202 SMART ring_2 151 191 IPR001841 -
Phac1g00969 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 198 IPR013083 -
Phac1g00969 202 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
Phac1g00969 202 FunFam E3 ubiquitin ligase BIG BROTHER-related 117 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00969 Phac-Chr1 8799309 8800186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00969 86 195 C3H Transcription Factor Family AT3G63530 44.248 2.84e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00969 K19045 - gmx:100780686 279.641