Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00962 ATGTCCACGCAGAATCGTCGCTCGTCGTTTTCTTCCTATACGGCGTCGTCTTTGGCCAAACGACATTCATCCGTCGTGTCGTCCGGGAAGGCTGCAAAGAGAGCGCCGCTCGCCAACATCACCAACCAGAGGAATGCGCCTTCCTCTTCTTCGGTTTCAAGTTCAATTAAAGCTTCCAAGACCAAGAAGGAGGCTCCAGCAAGAAGCAGTAGCATCACAAGATCAACAATTTGTGGGAACAACTTACGTGAGTTAAAGACTATTAACTCAAGCACAACTATTTTTCCAAAGGCTAATTGTTTACCACGAAGGAAGGATGCTGCTCCCACAGTTGCCAGAGTCTATGTGCCGGTTCAGAGCACCTTTGATGTTTCTCCTAGTAAATCAGATGCGAGGTCCGTTTCTATGGATGAAACGTTGTCTTCTTCTTATTCTATCAAGAGTCCTGATGAAGTTGAATATCTGGACAACAGGGATGTCTCAGCTTTTGATTCAATTCAGAGAAAGACAAGCAATTTGAGTCTTTGTGATACCTCCAAGACAGAAGGTAACACATATAGGAGGGAAATAGTTGTTGATTTGGAAAGAGAGGGCAAGGTTGTCAATATTGACAACATTTACTCAGATCCGCAGCTTTGTGCAACGTATGCTTGTGATATCTACAAGAACCTTCGTGAATCTGAGGAAAAGAAAAGGCCTTCTACTGACTTCATGGAGAGAATTCAGAATGACATAAATGTTAGCATGCGTGCAATATTGATTGACTGGCTTGTTGAGGTGGCTGAGGAGTATCGCCTTGTACCTGATACATTGTATTTGACAGTGAACTACATTGATCGGTATCTTTCAGGGAAGGCCATGAATAGACAAAGATTGCAATTACTTGGTGTTTCCTGTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCACAAGTGGAGGATTTTTGTTATATAACTGATAATACGTACTTAAAAGAAGAGCTTTTACGAATGGAATCTGCTGTTTTGAATTATCTTAAGTTCGAAATGACAGCCCCAACAGTTAAATGTTTCCTAAGACGATTTGTACATGTAGCAGCTCATGATGTCCAAGAGGTACCTTCACTTCAACTGGAGTGCCTAACCAACTTTATTGCCGAATTGTCGCTCTTGGAGTACAGCATGCTGTGTTATCCTCCATCACTGATAGCTGCTTCAGCAACTTTCCTTGCCAGATTTATACTTTTCCCTTCAAAGAAACCATGGAATTCCATATTGCAGCATTACGCACAATACCGGCCTTCTGATTTGTGTGCTTGTGTGAAAGATCTCCATCGCCTTTGTTGCAGCGATACTTCTAATTTACCCGCTATCCGAGAGAAATACAGTCAGCACAAGTACAAATGTGTGGCCAAGAAGTACATCCCTCTCTCAATACCGCAAGAAGTTTTCCGGAATTGA 1446 0.4239 MSTQNRRSSFSSYTASSLAKRHSSVVSSGKAAKRAPLANITNQRNAPSSSSVSSSIKASKTKKEAPARSSSITRSTICGNNLRELKTINSSTTIFPKANCLPRRKDAAPTVARVYVPVQSTFDVSPSKSDARSVSMDETLSSSYSIKSPDEVEYLDNRDVSAFDSIQRKTSNLSLCDTSKTEGNTYRREIVVDLEREGKVVNIDNIYSDPQLCATYACDIYKNLRESEEKKRPSTDFMERIQNDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGKAMNRQRLQLLGVSCMMIASKYEEICAPQVEDFCYITDNTYLKEELLRMESAVLNYLKFEMTAPTVKCFLRRFVHVAAHDVQEVPSLQLECLTNFIAELSLLEYSMLCYPPSLIAASATFLARFILFPSKKPWNSILQHYAQYRPSDLCACVKDLHRLCCSDTSNLPAIREKYSQHKYKCVAKKYIPLSIPQEVFRN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00962 481 CDD CYCLIN_AtCycA-like_rpt2 348 462 - -
Phac1g00962 481 SMART cyclin_7 352 441 IPR013763 -
Phac1g00962 481 SMART cyclin_7 255 339 IPR013763 -
Phac1g00962 481 PIRSF Cyclin_A_B_D_E 1 477 IPR046965 GO:0016538|GO:0044772
Phac1g00962 481 Gene3D - 233 346 - -
Phac1g00962 481 MobiDBLite consensus disorder prediction 1 73 - -
Phac1g00962 481 MobiDBLite consensus disorder prediction 1 24 - -
Phac1g00962 481 SUPERFAMILY Cyclin-like 208 345 IPR036915 -
Phac1g00962 481 FunFam Mitotic cyclin 6 233 333 - -
Phac1g00962 481 Gene3D - 219 467 - -
Phac1g00962 481 SMART Cyclin_C_2 348 471 IPR004367 -
Phac1g00962 481 PANTHER CYCLINS 150 465 IPR039361 -
Phac1g00962 481 Pfam Cyclin, N-terminal domain 219 345 IPR006671 -
Phac1g00962 481 ProSitePatterns Cyclins signature. 250 281 IPR006671 -
Phac1g00962 481 MobiDBLite consensus disorder prediction 38 73 - -
Phac1g00962 481 FunFam Cyclin A1 335 467 - -
Phac1g00962 481 Pfam Cyclin, C-terminal domain 348 467 IPR004367 -
Phac1g00962 481 CDD CYCLIN_AtCycA_like_rpt1 209 344 - -
Phac1g00962 481 SUPERFAMILY Cyclin-like 348 471 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00962 Phac-Chr1 8714974 8718900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00962 4 481 Core Cell Cycle Gene Families AT1G44110 58.333 8.32e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00962 K06627 - gmx:100776207 715.301