Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00954 ATGTCGAGGATTTGTGTGAAGAATCTTCCGAAATATGTTGCGGAGGATGAACTACGAGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTTAGGCTCATGCGTACCAAAGATGGTAAGAGTCGACAATTTGCGTTTATAGGGTATCGAACCGAAAATGAAGCGCATGAAGCCATTCGATATTTCAATAATTCTTATCTTCGCACATCTAAAATTGCATGTGAGGTAGCACGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGGGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGCACCGGATGTGGGGAAACCTGCTAGAGCTAAGGGACGACAAACAAATTTGAAGGACGGTGTGGATTTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACATCCGGTTTGACCGGTGTTGGTAACAACCAAGCAGTCTCCAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGAAAGTGACTTATTAGAAGATGAAATTCTGGATATTTCTGAACCCAGCAGCAAGTCACTTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGACAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACGATAGCAATGCTAATGATGCCTCATCTGTTGACAATGATGACAAAGATGATAATAGTGGGGTTAATGAAGATGAAAAACATAGTGATCCGAGATATGATGCTAGAGAGGTAGACCTGGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCATGAGAAGGATCAAGTAAATGTGACTGAGCACAGGGGACAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACCACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTATATACATCTTCAGAATCTGCAGCCAGGGCTCAGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTAATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAGCAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATTTGGTGTTGATAAAAGTGATTTACTTGACCGAGAAGCAGATGATCTTGCCGTACGTATTGCTCTAGGAGAGACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGCGTAAATGTGGAGGCATTGGAGGAACTTGCTAACAATAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAACAATAATGACATGAATGGTGCAATTGGAGAAAACGATGCCAAGAGGCAGATATTGGAGCAACATGTGGAAAGAATAACAGATGTAGATATTGATCCAGACAGAGTAGAGGCTCGGTCACTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAACTCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCTCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACAAAAGGCAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTGAGGTTGCCAACGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAAGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTGATAGAGAGAGCCAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTGCCCAATTCAGCGACGATCACAATGGATTTCAAGGTGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGGTTTGCTGACTAG 2538 0.4082 MSRICVKNLPKYVAEDELREFFSEKGIITDVRLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSYLRTSKIACEVARKLGDENLPRPWGRHSKKKDDKGTAPDVGKPARAKGRQTNLKDGVDFDDPQLQDFLQVMQPRVNSKMWANDTSGLTGVGNNQAVSNKDNEGASVSTDESDLLEDEILDISEPSSKSLERDEVISDMDYFKSRVTTEWSDSESSDEDDDDSNANDASSVDNDDKDDNSGVNEDEKHSDPRYDAREVDLEGKEDTSGEDVTHEKDQVNVTEHRGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTSSESAARAQKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKFGVDKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKIDGLKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSNNNDMNGAIGENDAKRQILEQHVERITDVDIDPDRVEARSLFVKNLNFKTTDETLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKQKAIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPTKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDDHNGFQGAIKLSKKRKDVDILDEGKMKFGRFAD* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00954 845 MobiDBLite consensus disorder prediction 145 173 - -
Phac1g00954 845 CDD RRM6_RBM19_RRM5_MRD1 719 793 - -
Phac1g00954 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Phac1g00954 845 MobiDBLite consensus disorder prediction 211 290 - -
Phac1g00954 845 Coils Coil 394 414 - -
Phac1g00954 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Phac1g00954 845 MobiDBLite consensus disorder prediction 145 198 - -
Phac1g00954 845 SUPERFAMILY RNA-binding domain, RBD 496 588 IPR035979 GO:0003676
Phac1g00954 845 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Phac1g00954 845 SUPERFAMILY RNA-binding domain, RBD 302 386 IPR035979 GO:0003676
Phac1g00954 845 Gene3D - 207 393 IPR012677 -
Phac1g00954 845 SMART rrm2_1 720 791 IPR003954 GO:0003676
Phac1g00954 845 SMART rrm2_1 305 378 IPR003954 GO:0003676
Phac1g00954 845 SMART rrm2_1 3 75 IPR003954 GO:0003676
Phac1g00954 845 SMART rrm2_1 620 700 IPR003954 GO:0003676
Phac1g00954 845 CDD RRM5_RBM19_like 620 698 IPR034423 -
Phac1g00954 845 MobiDBLite consensus disorder prediction 233 290 - -
Phac1g00954 845 SUPERFAMILY RNA-binding domain, RBD 715 798 IPR035979 GO:0003676
Phac1g00954 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 571 IPR000504 GO:0003723
Phac1g00954 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 719 795 IPR000504 GO:0003723
Phac1g00954 845 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 619 702 IPR000504 GO:0003723
Phac1g00954 845 FunFam Nucleotide/nucleic acid binding protein 615 710 - -
Phac1g00954 845 MobiDBLite consensus disorder prediction 83 125 - -
Phac1g00954 845 SUPERFAMILY RNA-binding domain, RBD 608 707 IPR035979 GO:0003676
Phac1g00954 845 Gene3D - 1 121 IPR012677 -
Phac1g00954 845 Gene3D - 593 710 IPR012677 -
Phac1g00954 845 CDD RRM1_MRD1 2 77 - -
Phac1g00954 845 SMART rrm1_1 720 791 IPR000504 GO:0003723
Phac1g00954 845 SMART rrm1_1 620 698 IPR000504 GO:0003723
Phac1g00954 845 SMART rrm1_1 3 75 IPR000504 GO:0003723
Phac1g00954 845 SMART rrm1_1 305 378 IPR000504 GO:0003723
Phac1g00954 845 SMART rrm1_1 500 567 IPR000504 GO:0003723
Phac1g00954 845 MobiDBLite consensus disorder prediction 396 415 - -
Phac1g00954 845 FunFam Multiple RNA-binding domain-containing protein 1 490 592 - -
Phac1g00954 845 MobiDBLite consensus disorder prediction 83 105 - -
Phac1g00954 845 Gene3D - 711 816 IPR012677 -
Phac1g00954 845 Gene3D - 481 592 IPR012677 -
Phac1g00954 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 562 IPR000504 GO:0003723
Phac1g00954 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 376 IPR000504 GO:0003723
Phac1g00954 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 721 788 IPR000504 GO:0003723
Phac1g00954 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Phac1g00954 845 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 621 695 IPR000504 GO:0003723
Phac1g00954 845 CDD RRM4_RBM19_RRM3_MRD1 499 570 - -
Phac1g00954 845 FunFam Multiple RNA-binding domain-containing protein 1 713 819 - -
Phac1g00954 845 MobiDBLite consensus disorder prediction 385 416 - -
Phac1g00954 845 MobiDBLite consensus disorder prediction 217 232 - -
Phac1g00954 845 FunFam - 274 421 - -
Phac1g00954 845 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 305 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00954 Phac-Chr1 8584539 8594744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00954 612 811 Eukaryotic Initiation Factors Gene Family AT1G49760 30.698 9.43e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00954 K14787 - gmx:100798742 1343.56