Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00953 ATGTCGAGGATTTGTGTGAAGAATCTTCCGAAATATGTTGCGGAGGATGAACTACGAGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTTAGGCTCATGCGTACCAAAGATGGTAAGAGTCGACAATTTGCGTTTATAGGGTATCGAACCGAAAATGAAGCGCATGAAGCCATTCGATATTTCAATAATTCTTATCTTCGCACATCTAAAATTGCATGTGAGGTAGCACGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGGGTCGCCATTCGAAGAAGAAAGACGACAAAGGGACTGCACCGGATGTGGGGAAACCTGCTAGAGCTAAGGGACGACAAACAAATTTGAAGGACGGTGTGGATTTTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTTAACTCTAAGATGTGGGCAAATGATACATCCGGTTTGACCGGTGTTGGTAACAACCAAGCAGTCTCCAATAAGGATAATGAAGGTGCATCAGTTTCAACTGATGAAAGTGACTTATTAGAAGATGAAATTCTGGATATTTCTGAACCCAGCAGCAAGTCACTTGAACGTGACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGACAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACGATAGCAATGCTAATGATGCCTCATCTGTTGACAATGATGACAAAGATGATAATAGTGGGGTTAATGAAGATGAAAAACATAGTGATCCGAGATATGATGCTAGAGAGGTAGACCTGGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCATGAGAAGGATCAAGTAAATGTGACTGAGCACAGGGGACAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACCACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTATATACATCTTCAGAATCTGCAGCCAGGGCTCAGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTAATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAGCAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATTTGGTGTTGATAAAAGTGATTTACTTGACCGAGAAGCAGATGATCTTGCCGTACGTATTGCTCTAGGAGAGACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGCGTAAATGTGGAGGCATTGGAGGAACTTGCTAACAATAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAACAATAATGACATGAATGGTGCAATTGGAGAAAACGATGCCAAGAGGCAGATATTGGAGCAACATGTGGAAAGAATAACAGATGTAGATATTGATCCAGACAGAGTAGAGGCTCGGTCACTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAACTCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCTCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACAAAAGGCAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCATTTGGCCAGGTGATTAATTACTGTTCAAAGAGTTAA 2259 0.4028 MSRICVKNLPKYVAEDELREFFSEKGIITDVRLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSYLRTSKIACEVARKLGDENLPRPWGRHSKKKDDKGTAPDVGKPARAKGRQTNLKDGVDFDDPQLQDFLQVMQPRVNSKMWANDTSGLTGVGNNQAVSNKDNEGASVSTDESDLLEDEILDISEPSSKSLERDEVISDMDYFKSRVTTEWSDSESSDEDDDDSNANDASSVDNDDKDDNSGVNEDEKHSDPRYDAREVDLEGKEDTSGEDVTHEKDQVNVTEHRGQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTSSESAARAQKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKFGVDKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKIDGLKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSNNNDMNGAIGENDAKRQILEQHVERITDVDIDPDRVEARSLFVKNLNFKTTDETLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKQKAIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQVINYCSKS* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00953 752 Gene3D - 481 593 IPR012677 -
Phac1g00953 752 Gene3D - 712 750 IPR012677 -
Phac1g00953 752 MobiDBLite consensus disorder prediction 145 173 - -
Phac1g00953 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 382 IPR000504 GO:0003723
Phac1g00953 752 SUPERFAMILY RNA-binding domain, RBD 302 386 IPR035979 GO:0003676
Phac1g00953 752 SMART rrm1_1 620 698 IPR000504 GO:0003723
Phac1g00953 752 SMART rrm1_1 3 75 IPR000504 GO:0003723
Phac1g00953 752 SMART rrm1_1 305 378 IPR000504 GO:0003723
Phac1g00953 752 SMART rrm1_1 500 567 IPR000504 GO:0003723
Phac1g00953 752 MobiDBLite consensus disorder prediction 211 290 - -
Phac1g00953 752 Gene3D - 594 711 IPR012677 -
Phac1g00953 752 Gene3D - 1 121 IPR012677 -
Phac1g00953 752 FunFam RNA-binding motif protein 19 1 100 - -
Phac1g00953 752 Coils Coil 394 414 - -
Phac1g00953 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Phac1g00953 752 MobiDBLite consensus disorder prediction 145 198 - -
Phac1g00953 752 Gene3D - 207 394 IPR012677 -
Phac1g00953 752 SUPERFAMILY RNA-binding domain, RBD 618 747 IPR035979 GO:0003676
Phac1g00953 752 CDD RRM5_RBM19_like 620 698 IPR034423 -
Phac1g00953 752 MobiDBLite consensus disorder prediction 233 290 - -
Phac1g00953 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 621 695 IPR000504 GO:0003723
Phac1g00953 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 562 IPR000504 GO:0003723
Phac1g00953 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Phac1g00953 752 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 376 IPR000504 GO:0003723
Phac1g00953 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 571 IPR000504 GO:0003723
Phac1g00953 752 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 619 702 IPR000504 GO:0003723
Phac1g00953 752 MobiDBLite consensus disorder prediction 83 125 - -
Phac1g00953 752 CDD RRM1_MRD1 2 77 - -
Phac1g00953 752 MobiDBLite consensus disorder prediction 396 415 - -
Phac1g00953 752 SMART rrm2_1 305 378 IPR003954 GO:0003676
Phac1g00953 752 SMART rrm2_1 620 700 IPR003954 GO:0003676
Phac1g00953 752 SMART rrm2_1 3 75 IPR003954 GO:0003676
Phac1g00953 752 MobiDBLite consensus disorder prediction 83 105 - -
Phac1g00953 752 FunFam - 274 421 - -
Phac1g00953 752 FunFam Nucleotide/nucleic acid binding protein 615 710 - -
Phac1g00953 752 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Phac1g00953 752 CDD RRM4_RBM19_RRM3_MRD1 499 570 - -
Phac1g00953 752 SUPERFAMILY RNA-binding domain, RBD 496 588 IPR035979 GO:0003676
Phac1g00953 752 MobiDBLite consensus disorder prediction 385 416 - -
Phac1g00953 752 MobiDBLite consensus disorder prediction 217 232 - -
Phac1g00953 752 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 305 405 - -
Phac1g00953 752 FunFam Multiple RNA-binding domain-containing protein 1 490 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00953 Phac-Chr1 8584539 8594507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00953 2 79 Eukaryotic Initiation Factors Gene Family AT1G49760 35.897 6.27e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00953 K14787 - gmx:100798742 1181.39