Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00951 ATGAATATTTACTCAGCCGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAAAACTTCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTGTGCTGAGTTTATGGAAAGAGATCAAGAAGCTATGCCATCAGAATATATGTCCTCTGTTTCTTGTAGATTTGCTAAAGAGGCAGATGCTGAACCTCCAATGCAGGCCAGTGGTGACTTGAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTCTAGAAATGCGGAAACTAGTTAATATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTGTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGCGACCATAAAAAGATAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAACTGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGTTGTCATCAAAGCTCGCATCAGGTGGACTTCAAAATTGTGCAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATACAAGATATGGATATAAATGGTTACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAAATCAACTTCCTGATAGTAAATTGAGCACACAAAGAATGAGCCAGCCTGACTTCAGTGTTCAATATGAAAAATCTACAAATGTTTTCAGAGGAAAACTGTTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGAGGTAATAAGTGGGAAAACAAAACAGATTGTCCACTACACTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCACGAGTTTGTACATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACACTCACATTCTTTATTCTCCACTTCCCTGCCACGTTCCCTTGCCTGGATTTGAAAGATTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGGAATCTGCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACACATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTTGTAAATGGGGGATTCAATCAGTTACATCTGAATGGATATTTGAATGCATAAAACAGAATGGAGTTGTTGCTACTGATCGATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCAGGAATTTGCACTGGGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGATAATCATGAGGCCAATTTCAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTGGAAGAACCTTGCCTGTCTAATAAGATGCCTTTCGCATCAAAGTCAGGTATTCATGCCTATGAAAAGAATTTTTCTGAAGACAATATGAGAATAGATGCTGGGGAGGTGTGTCCTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCCCCAGCACAGACAGGGTGTCAGAGAGGTATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCAGACCGTCTTTGGGTTATCTAAACACTGGTCAAACAGTGGCAGAAAAGATGATAATGGGGAGGCTTCTCCAGATAGACGAGCAGGAATATACGATGGATTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAAGGCTTATAGATATAATCCGAACTCGAAGTGGCACGCAGTGA 2142 0.402 MNIYSAACLNEEFFPVQHGSVSSHKVTRDLTMQNFQEKDIGKLQSAASSGATDSNVQVSCAEFMERDQEAMPSEYMSSVSCRFAKEADAEPPMQASGDLNFDGVVADDSESDDNDLYLSECRILLVGFEALEMRKLVNIVRKGGGSRYMCFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKIEVPVLRRHIAYDLLHPKASLVKGTVTGSTSMDHSKSSSCHQSSHQVDFKIVQPESLEKRKEEIQDMDINGYSFRKANCRTMLQNQLPDSKLSTQRMSQPDFSVQYEKSTNVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGKTKQIVHYTVECHGVTPMLTGDSTSLYISSHWIRSCLEAGSLLDVDTHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYDGACKWGIQSVTSEWIFECIKQNGVVATDRFLPKEVTAQDREAGICTGSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVDNHEANFKKPSVYSKKARLVEEPCLSNKMPFASKSGIHAYEKNFSEDNMRIDAGEVCPTVPDVAAAIEDLLEQTSKMHGQRSPAQTGCQRGIYPSDLSVLGEDNSNPQTVFGLSKHWSNSGRKDDNGEASPDRRAGIYDGFSETQTESQVVSYEEDLSGRQRLIDIIRTRSGTQ* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00951 713 Gene3D BRCT domain 300 397 IPR036420 -
Phac1g00951 713 ProSiteProfiles BRCT domain profile. 303 391 IPR001357 -
Phac1g00951 713 SUPERFAMILY BRCT domain 306 393 IPR036420 -
Phac1g00951 713 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 6 709 - -
Phac1g00951 713 SUPERFAMILY BRCT domain 113 197 IPR036420 -
Phac1g00951 713 ProSiteProfiles BRCT domain profile. 404 487 IPR001357 -
Phac1g00951 713 SUPERFAMILY BRCT domain 369 488 IPR036420 -
Phac1g00951 713 Gene3D BRCT domain 398 492 IPR036420 -
Phac1g00951 713 SMART BRCT_7 305 381 IPR001357 -
Phac1g00951 713 SMART BRCT_7 401 477 IPR001357 -
Phac1g00951 713 SMART BRCT_7 115 195 IPR001357 -
Phac1g00951 713 CDD BRCT_TopBP1_rpt2_like 402 477 - -
Phac1g00951 713 ProSiteProfiles BRCT domain profile. 113 191 IPR001357 -
Phac1g00951 713 FunFam Transcription coactivator 300 397 - -
Phac1g00951 713 Gene3D BRCT domain 104 201 IPR036420 -
Phac1g00951 713 Pfam BRCT domain, a BRCA1 C-terminus domain 305 388 IPR001357 -
Phac1g00951 713 MobiDBLite consensus disorder prediction 657 671 - -
Phac1g00951 713 FunFam Transcription coactivator 95 205 - -
Phac1g00951 713 MobiDBLite consensus disorder prediction 651 686 - -
Phac1g00951 713 Pfam twin BRCT domain 408 469 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00951 Phac-Chr1 8553542 8560472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00951 2 710 Core DNA Replication Machinery Family AT1G77320 42.181 2.99e-165 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00951 K10728 - gmx:100804966 1061.21