Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00950 ATGTTTGTCATTTTGGTGGTCAAGTGGACAACAGCAGCCCAATTGGTGCAATTGGCTGTTCCAGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTGCTACACACTAAGACATCGTTGGATCTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCAGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGTAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAAAACTTCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTGTGCTGAGTTTATGGAAAGAGATCAAGAAGCTATGCCATCAGAATATATGTCCTCTGTTTCTTGTAGATTTGCTAAAGAGGCAGATGCTGAACCTCCAATGCAGGCCAGTGGTGACTTGAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTCTAGAAATGCGGAAACTAGTTAATATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTGTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGCGACCATAAAAAGATAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAACTGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGTTGTCATCAAAGCTCGCATCAGGTGGACTTCAAAATTGTGCAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATACAAGATATGGATATAAATGGTTACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAAATCAACTTCCTGATAGTAAATTGAGCACACAAAGAATGAGCCAGCCTGACTTCAGTGTTCAATATGAAAAATCTACAAATGTTTTCAGAGGAAAACTGTTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGAGGTAATAAGTGGGAAAACAAAACAGATTGTCCACTACACTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCACGAGTTTGTACATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACACTCACATTCTTTATTCTCCACTTCCCTGCCACGTTCCCTTGCCTGGATTTGAAAGATTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGGAATCTGCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACACATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTTGTAAATGGGGGATTCAATCAGTTACATCTGAATGGATATTTGAATGCATAAAACAGAATGGAGTTGTTGCTACTGATCGATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCAGGAATTTGCACTGGGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGATAATCATGAGGCCAATTTCAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTGGAAGAACCTTGCCTGTCTAATAAGATGCCTTTCGCATCAAAGTCAGGTATTCATGCCTATGAAAAGAATTTTTCTGAAGACAATATGAGAATAGATGCTGGGGAGGTGTGTCCTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCCCCAGCACAGACAGGGTGTCAGAGAGGTATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCAGACCGTCTTTGGGTTATCTAAACACTGGTCAAACAGTGGCAGAAAAGATGATAATGGGGAGGCTTCTCCAGATAGACGAGCAGGAATATACGATGGATTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAAGGCTTATAGATATAATCCGAACTCGAAGTGGCACGCAGTGA 2625 0.4023 MFVILVVKWTTAAQLVQLAVPVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLAAKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPEGDKYKVAKRWGHIHIVISKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQNFQEKDIGKLQSAASSGATDSNVQVSCAEFMERDQEAMPSEYMSSVSCRFAKEADAEPPMQASGDLNFDGVVADDSESDDNDLYLSECRILLVGFEALEMRKLVNIVRKGGGSRYMCFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKIEVPVLRRHIAYDLLHPKASLVKGTVTGSTSMDHSKSSSCHQSSHQVDFKIVQPESLEKRKEEIQDMDINGYSFRKANCRTMLQNQLPDSKLSTQRMSQPDFSVQYEKSTNVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGKTKQIVHYTVECHGVTPMLTGDSTSLYISSHWIRSCLEAGSLLDVDTHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYDGACKWGIQSVTSEWIFECIKQNGVVATDRFLPKEVTAQDREAGICTGSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVDNHEANFKKPSVYSKKARLVEEPCLSNKMPFASKSGIHAYEKNFSEDNMRIDAGEVCPTVPDVAAAIEDLLEQTSKMHGQRSPAQTGCQRGIYPSDLSVLGEDNSNPQTVFGLSKHWSNSGRKDDNGEASPDRRAGIYDGFSETQTESQVVSYEEDLSGRQRLIDIIRTRSGTQ* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00950 874 SMART BRCT_7 11 80 IPR001357 -
Phac1g00950 874 SMART BRCT_7 90 167 IPR001357 -
Phac1g00950 874 SMART BRCT_7 466 542 IPR001357 -
Phac1g00950 874 SMART BRCT_7 562 638 IPR001357 -
Phac1g00950 874 SMART BRCT_7 276 356 IPR001357 -
Phac1g00950 874 Pfam twin BRCT domain 569 630 IPR001357 -
Phac1g00950 874 Pfam twin BRCT domain 96 159 IPR001357 -
Phac1g00950 874 SUPERFAMILY BRCT domain 467 554 IPR036420 -
Phac1g00950 874 SUPERFAMILY BRCT domain 530 649 IPR036420 -
Phac1g00950 874 FunFam Transcription coactivator 256 366 - -
Phac1g00950 874 Pfam BRCT domain, a BRCA1 C-terminus domain 466 549 IPR001357 -
Phac1g00950 874 Gene3D BRCT domain 265 362 IPR036420 -
Phac1g00950 874 ProSiteProfiles BRCT domain profile. 274 352 IPR001357 -
Phac1g00950 874 MobiDBLite consensus disorder prediction 812 847 - -
Phac1g00950 874 MobiDBLite consensus disorder prediction 818 832 - -
Phac1g00950 874 Pfam BRCA1 C Terminus (BRCT) domain 24 76 IPR001357 -
Phac1g00950 874 CDD BRCT_TopBP1_rpt2_like 563 638 - -
Phac1g00950 874 ProSiteProfiles BRCT domain profile. 88 177 IPR001357 -
Phac1g00950 874 ProSiteProfiles BRCT domain profile. 464 552 IPR001357 -
Phac1g00950 874 FunFam Transcription coactivator 461 558 - -
Phac1g00950 874 SUPERFAMILY BRCT domain 274 358 IPR036420 -
Phac1g00950 874 CDD BRCT_TopBP1_rpt2_like 92 167 - -
Phac1g00950 874 SUPERFAMILY BRCT domain 23 90 IPR036420 -
Phac1g00950 874 ProSiteProfiles BRCT domain profile. 23 90 IPR001357 -
Phac1g00950 874 Gene3D BRCT domain 17 91 IPR036420 -
Phac1g00950 874 Gene3D BRCT domain 559 653 IPR036420 -
Phac1g00950 874 SUPERFAMILY BRCT domain 92 177 IPR036420 -
Phac1g00950 874 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 870 - -
Phac1g00950 874 CDD BRCT 23 76 - -
Phac1g00950 874 Gene3D BRCT domain 461 558 IPR036420 -
Phac1g00950 874 Gene3D BRCT domain 92 178 IPR036420 -
Phac1g00950 874 FunFam DNA topoisomerase II binding protein 1 93 185 - -
Phac1g00950 874 ProSiteProfiles BRCT domain profile. 565 648 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00950 Phac-Chr1 8549326 8560472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00950 22 871 Core DNA Replication Machinery Family AT1G77320 47.007 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00950 K10728 - gmx:100804966 1338.94