Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00948 ATGTTGAAGACGAAAGCATTCCAAGGTGCCCACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTGCACGATGCCGTTAAAGATAACGGCGCTCAGCTCCACCTCTGCTGCGACCCCTCCCGTAACGGCCCCAACGATTACCACATCATTGCTTCCAGAAAACACGAAAAGTTCGATCATCTCAAATCCAAGGGCTGCAAGTTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAGGTCTCTGCCTAAACAAGGCTTCACTTGTTGCCTTGCCATGGACGGCGTCAAAATACTTGCATCTGGTTTTGATACGGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTGCTACACACTAAGACATCGTTGGATCTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCAGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCTGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGTAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAAAACTTCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTGTGCTGAGTTTATGGAAAGAGATCAAGAAGCTATGCCATCAGAATATATGTCCTCTGTTTCTTGTAGATTTGCTAAAGAGGCAGATGCTGAACCTCCAATGCAGGCCAGTGGTGACTTGAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTCTAGAAATGCGGAAACTAGTTAATATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTGTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGCGACCATAAAAAGATAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAACTGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGTTGTCATCAAAGCTCGCATCAGGTGGACTTCAAAATTGTGCAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATACAAGATATGGATATAAATGGTTACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAAATCAACTTCCTGATAGTAAATTGAGCACACAAAGAATGAGCCAGCCTGACTTCAGTGTTCAATATGAAAAATCTACAAATGTTTTCAGAGGAAAACTGTTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGAGGTAATAAGTGGGAAAACAAAACAGATTGTCCACTACACTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCACGAGTTTGTACATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACACTCACATTCTTTATTCTCCACTTCCCTGCCACGTTCCCTTGCCTGGATTTGAAAGATTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGGAATCTGCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACACATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTTGTAAATGGGGGATTCAATCAGTTACATCTGAATGGATATTTGAATGCATAAAACAGAATGGAGTTGTTGCTACTGATCGATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCAGGAATTTGCACTGGGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGATAATCATGAGGCCAATTTCAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTGGAAGAACCTTGCCTGTCTAATAAGATGCCTTTCGCATCAAAGTCAGGTATTCATGCCTATGAAAAGAATTTTTCTGAAGACAATATGAGAATAGATGCTGGGGAGGTGTGTCCTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCCCCAGCACAGACAGGGTGTCAGAGAGGTATTTACCCATCTGATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCAGACCGTCTTTGGGTTATCTAAACACTGGTCAAACAGTGGCAGAAAAGATGATAATGGGGAGGCTTCTCCAGATAGACGAGCAGGAATATACGATGGATTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAAGGCTTATAGATATAATCCGAACTCGAAGTGGCACGCAGTGA 2907 0.4149 MLKTKAFQGAHVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGPNDYHIIASRKHEKFDHLKSKGCKLLGPRCVLSCAKGGRSLPKQGFTCCLAMDGVKILASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLAAKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPEGDKYKVAKRWGHIHIVISKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQNFQEKDIGKLQSAASSGATDSNVQVSCAEFMERDQEAMPSEYMSSVSCRFAKEADAEPPMQASGDLNFDGVVADDSESDDNDLYLSECRILLVGFEALEMRKLVNIVRKGGGSRYMCFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKIEVPVLRRHIAYDLLHPKASLVKGTVTGSTSMDHSKSSSCHQSSHQVDFKIVQPESLEKRKEEIQDMDINGYSFRKANCRTMLQNQLPDSKLSTQRMSQPDFSVQYEKSTNVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGKTKQIVHYTVECHGVTPMLTGDSTSLYISSHWIRSCLEAGSLLDVDTHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYDGACKWGIQSVTSEWIFECIKQNGVVATDRFLPKEVTAQDREAGICTGSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVDNHEANFKKPSVYSKKARLVEEPCLSNKMPFASKSGIHAYEKNFSEDNMRIDAGEVCPTVPDVAAAIEDLLEQTSKMHGQRSPAQTGCQRGIYPSDLSVLGEDNSNPQTVFGLSKHWSNSGRKDDNGEASPDRRAGIYDGFSETQTESQVVSYEEDLSGRQRLIDIIRTRSGTQ* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00948 968 Gene3D BRCT domain 97 185 IPR036420 -
Phac1g00948 968 Pfam BRCT domain, a BRCA1 C-terminus domain 560 643 IPR001357 -
Phac1g00948 968 FunFam Transcription coactivator 555 652 - -
Phac1g00948 968 ProSiteProfiles BRCT domain profile. 558 646 IPR001357 -
Phac1g00948 968 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Phac1g00948 968 CDD BRCT 103 170 - -
Phac1g00948 968 Gene3D BRCT domain 36 94 IPR036420 -
Phac1g00948 968 Pfam twin BRCT domain 190 253 IPR001357 -
Phac1g00948 968 Pfam twin BRCT domain 663 724 IPR001357 -
Phac1g00948 968 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Phac1g00948 968 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Phac1g00948 968 Gene3D BRCT domain 653 747 IPR036420 -
Phac1g00948 968 SUPERFAMILY BRCT domain 368 452 IPR036420 -
Phac1g00948 968 FunFam Transcription coactivator 350 460 - -
Phac1g00948 968 FunFam Transcription coactivator 97 186 - -
Phac1g00948 968 MobiDBLite consensus disorder prediction 907 936 - -
Phac1g00948 968 SUPERFAMILY BRCT domain 561 648 IPR036420 -
Phac1g00948 968 CDD BRCT_TopBP1_rpt2_like 657 732 - -
Phac1g00948 968 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 964 - -
Phac1g00948 968 SMART BRCT_7 184 261 IPR001357 -
Phac1g00948 968 SMART BRCT_7 97 174 IPR001357 -
Phac1g00948 968 SMART BRCT_7 656 732 IPR001357 -
Phac1g00948 968 SMART BRCT_7 370 450 IPR001357 -
Phac1g00948 968 SMART BRCT_7 560 636 IPR001357 -
Phac1g00948 968 SMART BRCT_7 4 86 IPR001357 -
Phac1g00948 968 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Phac1g00948 968 ProSiteProfiles BRCT domain profile. 659 742 IPR001357 -
Phac1g00948 968 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Phac1g00948 968 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Phac1g00948 968 MobiDBLite consensus disorder prediction 912 926 - -
Phac1g00948 968 Gene3D BRCT domain 186 272 IPR036420 -
Phac1g00948 968 Gene3D BRCT domain 359 456 IPR036420 -
Phac1g00948 968 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Phac1g00948 968 SUPERFAMILY BRCT domain 625 743 IPR036420 -
Phac1g00948 968 Gene3D BRCT domain 555 652 IPR036420 -
Phac1g00948 968 ProSiteProfiles BRCT domain profile. 368 446 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00948 Phac-Chr1 8545390 8560472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00948 1 965 Core DNA Replication Machinery Family AT1G77320 49.361 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00948 K10728 - gmx:100804966 1559.27