Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00910 ATGGAAGCTGAGGATGGAACTAGCAATGGTGATAACATTGAATGGGCTGTGTTGGATAGGAGGCCAGATTCTGAAGATGGAGATTACGGGGGTAGAATTCAAGGTGGAAATAATGTTGCTGGAGGCGAAGAAGGTCAGGGCTTGAAGAATGAAACTATAAATGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCTGGGTTTGAAGAAGGAAGCTGTAGATAGTTGGGTGACAAGTAAAAGTGGGAATGGTATTGCTGAAGGTGAAGAAGTTCGGGGCTTAAAGCGTGAAGCTGTAAATAATGGGGTGACACGCGAAGGAGGAAATGGTGTTGCTAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAATTACTGGGTTAACAGTTGAAGGGGGTAATGGTGTTGCTGCAGGTGAAGAAAAAGTTAAGGACTTGAAGAATGAAACTGTAAATAATGGAATGGTACTTGAGGGTGAAAATGGTGCTGCTGAAGGCGAAGTTTGGGCCTTGAAGAATGATGTTGTAAATATCAGGGTCGAAGTTGCTGATGGGAATGGTGTTTCTGAAGGTGGAGAGGTTTTGGGCTCAAAGAAGGAAATTATAAATAATGGAGTGTCAATTGCTGATGGGAATCTTGTTGCTTACAGTGGAGGTCTGGGCTCAAAGAATGAAGCTGTAAATAATGAGATGGTAATTGCAGATGGCAGTGGTGTTACTGCAGTTGAAGACGACCGCTTGAAGAATGGAACTGTAGATAATGTAGTGATACGTGCAGATGGATTTGGTGTTGTAGAAGGAAACTCTGGTGCAGTTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAATCTACTTCAGAATTTAAAGTTCAGGAGAACAGAAGAATACATTTAGAAGCTGAAACTTTTAAAATTGACTACAATGGGCAAGAATGCTCTCCAGAATTAGAGTGTTTGCTTCATAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTACATGATGGATTTTCTAGTAAGTCAGATGTCCATGGTGCAACTAAAAGGTGTCAGCGTGTGTTCTGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAATACTGCTTGAAAATTTTCAAGAAATGAAACCTGAAACTGTATTTGACTTTAGCCTGATAAACTCAAGGATGAAAGAGCATGCGTATGAACAATCGCCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAAAAGCTTCAAAATACTGGTCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACCTGTCAAAAGCTTCATTCTGTGAGCGGGTGGGGATTTCAGCGCACAGATCCTTTGTAGACGAAAAGCAAGTGGAATCAATCTCTCACATGAAGCCAGAGAAGACAGTAGCATGTGTTACATCCAAAACTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGGGCCTGCTGTGAAAGAAGTACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGAGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCGAAGACACTGGACAACATTGTTGGCAAGGAAAGCATCCCTACAAAAGAGGAAAAACCGAATGAATTGGAAGAGAATCCAAATTGTACTTGTGATGGGATTCCAGTTTCCATAGGTGGGAGACATCCATCTGTCTGCAAAACTTGTAAAATAGCGGTGCGTGGTGGAAAAATAAAAGTCTGTGGTCACTTATTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAACTAAGCAGCTTAAGACATACGGTCACTGTTGGTATTGCCCTTCTTGTATTTGCCAAGTCTGCTTCACTGACAAAGATGATGATAGGATTGTACTCTGTGATGGCTGTGATCATGCATACCATGTGTACTGTATGAAACCTCCGCTTAATAATATTCCTACAGGGAAATGGTTCTGCATAAAATGTGAACCCGGGATACTAGCAATACGCCAGGCAAGGAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCCGAATGATTTAAAGCCAAATGAAGACATTGACCAAAAATGGAACAGAAAACGTGGACGGGAAAGCGACACAGTCGGAGGAATGGACATGCTTATAAATGCAGCAAATACTCTGAAATTTGAAGAGAACATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACATAA 2286 0.416 MEAEDGTSNGDNIEWAVLDRRPDSEDGDYGGRIQGGNNVAGGEEGQGLKNETINDGVVVEGEEVLGLKKEAVDSWVTSKSGNGIAEGEEVRGLKREAVNNGVTREGGNGVANRKEVWGLKNGTVITGLTVEGGNGVAAGEEKVKDLKNETVNNGMVLEGENGAAEGEVWALKNDVVNIRVEVADGNGVSEGGEVLGSKKEIINNGVSIADGNLVAYSGGLGSKNEAVNNEMVIADGSGVTAVEDDRLKNGTVDNVVIRADGFGVVEGNSGAVECFRTYKRRKHVKSTSEFKVQENRRIHLEAETFKIDYNGQECSPELECLLHRLQSEANGQENAVHDGFSSKSDVHGATKRCQRVFCDILASEKFSSLCKILLENFQEMKPETVFDFSLINSRMKEHAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVGISAHRSFVDEKQVESISHMKPEKTVACVTSKTGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIGPAVKEVPRKSWFCANCTARGIGCQHENCVVCERLNVPKTLDNIVGKESIPTKEEKPNELEENPNCTCDGIPVSIGGRHPSVCKTCKIAVRGGKIKVCGHLFCPSKYYHVRCLSTKQLKTYGHCWYCPSCICQVCFTDKDDDRIVLCDGCDHAYHVYCMKPPLNNIPTGKWFCIKCEPGILAIRQARKAYESKKGKIGPNDLKPNEDIDQKWNRKRGRESDTVGGMDMLINAANTLKFEENMNAIQIESERTLT* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00910 761 ProSiteProfiles Zinc finger PHD-type profile. 636 686 IPR019787 -
Phac1g00910 761 MobiDBLite consensus disorder prediction 701 727 - -
Phac1g00910 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 529 IPR013083 -
Phac1g00910 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 583 687 IPR013083 -
Phac1g00910 761 PANTHER OS02G0192300 PROTEIN 398 533 - -
Phac1g00910 761 FunFam PHD finger protein EHD3 isoform A 371 528 - -
Phac1g00910 761 SMART PHD_3 589 638 IPR001965 -
Phac1g00910 761 SMART PHD_3 641 684 IPR001965 -
Phac1g00910 761 SMART PHD_3 479 525 IPR001965 -
Phac1g00910 761 SUPERFAMILY FYVE/PHD zinc finger 638 689 IPR011011 -
Phac1g00910 761 MobiDBLite consensus disorder prediction 1 31 - -
Phac1g00910 761 ProSitePatterns Zinc finger PHD-type signature. 480 524 IPR019786 -
Phac1g00910 761 Pfam PHD-finger 480 526 IPR019787 -
Phac1g00910 761 Pfam PHD-finger 638 685 IPR019787 -
Phac1g00910 761 SUPERFAMILY FYVE/PHD zinc finger 457 526 IPR011011 -
Phac1g00910 761 CDD PHD1_KDM5A_like 638 683 - -
Phac1g00910 761 ProSiteProfiles Zinc finger PHD-type profile. 477 527 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00910 Phac-Chr1 8077778 8091979 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00910 638 701 C2H2 Transcription Factor Family AT3G01460 51.562 5.23e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac1g00910 PHD 4.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00910 - - vun:114195482 1278.46