Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00909 ATGGAAGCTGAGGATGGAACTAGCAATGGTGATAACATTGAATGGGCTGTGTTGGATAGGAGGCCAGATTCTGAAGATGGAGATTACGGGGGTAGAATTCAAGGTGGAAATAATGTTGCTGGAGGCGAAGAAGGTCAGGGCTTGAAGAATGAAACTATAAATGATGGGGTTGTGGTTGAAGGTGAAGAAGTTCTGGGTTTGAAGAAGGAAGCTGTAGATAGTTGGGTGACAAGTAAAAGTGGGAATGGTATTGCTGAAGGTGAAGAAGTTCGGGGCTTAAAGCGTGAAGCTGTAAATAATGGGGTGACACGCGAAGGAGGAAATGGTGTTGCTAATAGGAAAGAAGTTTGGGGTTTGAAGAATGGAACTGTAATTACTGGGTTAACAGTTGAAGGGGGTAATGGTGTTGCTGCAGGTGAAGAAAAAGTTAAGGACTTGAAGAATGAAACTGTAAATAATGGAATGGTACTTGAGGGTGAAAATGGTGCTGCTGAAGGCGAAGTTTGGGCCTTGAAGAATGATGTTGTAAATATCAGGGTCGAAGTTGCTGATGGGAATGGTGTTTCTGAAGGTGGAGAGGTTTTGGGCTCAAAGAAGGAAATTATAAATAATGGAGTGTCAATTGCTGATGGGAATCTTGTTGCTTACAGTGGAGGTCTGGGCTCAAAGAATGAAGCTGTAAATAATGAGATGGTAATTGCAGATGGCAGTGGTGTTACTGCAGTTGAAGACGACCGCTTGAAGAATGGAACTGTAGATAATGTAGTGATACGTGCAGATGGATTTGGTGTTGTAGAAGGAAACTCTGGTGCAGTTGAATGTTTTCGAACATATAAGAGGCGCAAGCATGTAAAATCTACTTCAGAATTTAAAGTTCAGGAGAACAGAAGAATACATTTAGAAGCTGTAAGTCACCTGCTGGACCAGGAAACTTTTAAAATTGACTACAATGGGCAAGAATGCTCTCCAGAATTAGAGTGTTTGCTTCATAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTACATGATGGATTTTCTAGTAAGTCAGATGTCCATGGTGCAACTAAAAGGTGTCAGCGTGTGTTCTGTGATATCTTAGCCTCTGAGAAGTTCAGTTCATTATGTAAAATACTGCTTGAAAATTTTCAAGAAATGAAACCTGAAACTGTATTTGACTTTAGCCTGATAAACTCAAGGATGAAAGAGCATGCGTATGAACAATCGCCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAAAAGCTTCAAAATACTGGTCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACCTGTCAAAAGCTTCATTCTGTGAGCGGGTGGGGATTTCAGCGCACAGATCCTTTGTAGACGAAAAGCAAGTGGAATCAATCTCTCACATGAAGCCAGAGAAGACAGTAGCATGTGTTACATCCAAAACTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGGGCCTGCTGTGAAAGAAGTACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGAGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCGAAGACACTGGACAACATTGTTGGCAAGGAAAGCATCCCTACAAAAGAGGAAAAACCGAATGAATTGGAAGAGAATCCAAATTGTACTTGTGATGGGATTCCAGTTTCCATAGGTGGGAGACATCCATCTGTCTGCAAAACTTGTAAAATAGCGGTGCGTGGTGGAAAAATAAAAGTCTGTGGTCACTTATTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAACTAAGCAGCTTAAGACATACGGTCACTGTTGGTATTGCCCTTCTTGTATTTGCCAAGTCTGCTTCACTGACAAAGATGATGATAGGATTGTACTCTGTGATGGCTGTGATCATGCATACCATGTGTACTGTATGAAACCTCCGCTTAATAATATTCCTACAGGGAAATGGTTCTGCATAAAATGTGAACCCGGGATACTAGCAATACGCCAGGCAAGGAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCCGAATGATTTAAAGCCAAATGAAGACATTGACCAAAAATGGAACAGAAAACGTGGACGGGAAAGCGACACAGTCGGAGGAATGGACATGCTTATAAATGCAGCAAATACTCTGAAATTTGAAGAGAACATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACATAA 2307 0.4174 MEAEDGTSNGDNIEWAVLDRRPDSEDGDYGGRIQGGNNVAGGEEGQGLKNETINDGVVVEGEEVLGLKKEAVDSWVTSKSGNGIAEGEEVRGLKREAVNNGVTREGGNGVANRKEVWGLKNGTVITGLTVEGGNGVAAGEEKVKDLKNETVNNGMVLEGENGAAEGEVWALKNDVVNIRVEVADGNGVSEGGEVLGSKKEIINNGVSIADGNLVAYSGGLGSKNEAVNNEMVIADGSGVTAVEDDRLKNGTVDNVVIRADGFGVVEGNSGAVECFRTYKRRKHVKSTSEFKVQENRRIHLEAVSHLLDQETFKIDYNGQECSPELECLLHRLQSEANGQENAVHDGFSSKSDVHGATKRCQRVFCDILASEKFSSLCKILLENFQEMKPETVFDFSLINSRMKEHAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVGISAHRSFVDEKQVESISHMKPEKTVACVTSKTGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIGPAVKEVPRKSWFCANCTARGIGCQHENCVVCERLNVPKTLDNIVGKESIPTKEEKPNELEENPNCTCDGIPVSIGGRHPSVCKTCKIAVRGGKIKVCGHLFCPSKYYHVRCLSTKQLKTYGHCWYCPSCICQVCFTDKDDDRIVLCDGCDHAYHVYCMKPPLNNIPTGKWFCIKCEPGILAIRQARKAYESKKGKIGPNDLKPNEDIDQKWNRKRGRESDTVGGMDMLINAANTLKFEENMNAIQIESERTLT* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00909 768 SUPERFAMILY FYVE/PHD zinc finger 464 533 IPR011011 -
Phac1g00909 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 694 IPR013083 -
Phac1g00909 768 ProSitePatterns Zinc finger PHD-type signature. 487 531 IPR019786 -
Phac1g00909 768 ProSiteProfiles Zinc finger PHD-type profile. 484 534 IPR019787 -
Phac1g00909 768 ProSiteProfiles Zinc finger PHD-type profile. 643 693 IPR019787 -
Phac1g00909 768 SMART PHD_3 486 532 IPR001965 -
Phac1g00909 768 SMART PHD_3 648 691 IPR001965 -
Phac1g00909 768 SMART PHD_3 596 645 IPR001965 -
Phac1g00909 768 SUPERFAMILY FYVE/PHD zinc finger 645 696 IPR011011 -
Phac1g00909 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 536 IPR013083 -
Phac1g00909 768 MobiDBLite consensus disorder prediction 1 31 - -
Phac1g00909 768 CDD PHD1_KDM5A_like 645 690 - -
Phac1g00909 768 PANTHER OS02G0192300 PROTEIN 405 533 - -
Phac1g00909 768 Pfam PHD-finger 487 533 IPR019787 -
Phac1g00909 768 Pfam PHD-finger 645 692 IPR019787 -
Phac1g00909 768 MobiDBLite consensus disorder prediction 708 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00909 Phac-Chr1 8077778 8091820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00909 645 708 C2H2 Transcription Factor Family AT3G01460 51.562 5.36e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac1g00909 PHD 4.7e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00909 - - vun:114195482 1271.53