Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00890 ATGGACAATTCTACTGCAGCTTCTGAGAACTTGACCCATCATCGTGCTAATCACTGGAAGCAAGATGAGGATCAAAAGCTAATCCAACTGGTTCAAGAACATGGTCCCCAACACTGGAATGCAATTGCTCAACATATGCAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTAGTCCTGCAGTTAACAGAAACCCTTTCACGAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGCGAGTTTTATGGGACAAAATGGGCAACCATAGCCAAACTCTTCAACGGGAGAACCGATAATGCCTTGAAAAACCATTGGCACGTTTTGACCGCACGAAAGCGAAAGGCAGCCAACAATGGAAGTTTGCAAGAGCTGGTCAACGCTTCAAGCTCTTCCTCCCCCTGCAACACTCCTCATCCTCATCATGACGCATTCTTTCACATGAGGAACTTCAACGCTGCACAAACTGCAGTTGCACCAGTGTGTCCCAGTGCTTCGTTGAGCCCTGTCAACTTTGGATCAGTACCATCCTTCTCAGAATCTTTTCCTGCTGCTGCTGCTGGTACTGCTGCTGGAATGATGAATAAGGGCTTGTTTCATAGCTCATCATCAGCTGAGTTGAAGGGTTCTTCTTCCTCGGAGAAAAACCAAGCACATGACGCTGGATTCAAAGATGCTACTTTCTATGATTTTCTTGGTGTCGGTTCTGATGATGATGAGTGA 732 0.4617 MDNSTAASENLTHHRANHWKQDEDQKLIQLVQEHGPQHWNAIAQHMQGRTGKSCRLRWRNHLSPAVNRNPFTKEEEERLIAAREFYGTKWATIAKLFNGRTDNALKNHWHVLTARKRKAANNGSLQELVNASSSSSPCNTPHPHHDAFFHMRNFNAAQTAVAPVCPSASLSPVNFGSVPSFSESFPAAAAGTAAGMMNKGLFHSSSSAELKGSSSSEKNQAHDAGFKDATFYDFLGVGSDDDE* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00890 243 SMART sant 15 64 IPR001005 -
Phac1g00890 243 SMART sant 67 115 IPR001005 -
Phac1g00890 243 Pfam Myb-like DNA-binding domain 19 79 - -
Phac1g00890 243 PANTHER MYB PROTEIN-RELATED 18 145 - -
Phac1g00890 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Phac1g00890 243 Gene3D - 69 137 - -
Phac1g00890 243 CDD SANT 70 112 IPR001005 -
Phac1g00890 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 66 IPR017930 -
Phac1g00890 243 CDD SANT 19 62 IPR001005 -
Phac1g00890 243 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Phac1g00890 243 FunFam MYB transcription factor 17 67 - -
Phac1g00890 243 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phac1g00890 243 Gene3D - 17 67 - -
Phac1g00890 243 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00890 Phac-Chr1 7733661 7735825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00890 18 142 MYB Transcription Factor Family AT3G29020 59.200 3.73e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phac1g00890 Myb_DNA-bind_6 9.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00890 K09422 - gmx:102660725 220.705