Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00888 ATGCTCTATATGCCAGGCCTAGATGCAGCTTTGTTCTTGTCGCTGTCTAAAATGCTTCGTAATATAAAAAAAATCTGTGGCAAACCAAGGCCTGTCCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAACAGTTCACTTATGAGGAAACCTGCTCTTACATCTCATCAAGAAGAAGGTTGTCGTGATACAGACAGTCTATCATTTACTGAGCTTACTAAAGACATACCTTTCCCTGTTACATACTATACACTAACTGAGAAAGAGCTGGAAGAGAATGGATATTCTTTTAATCAACCAGGTTTTCTTTCTACTTTGCCTGCACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTCACAAGAATTAGTCTAGTGGATGTCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCACTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAACTGTTCCTAGAGTTTGTTTACAAGGAGACTATCCTTGTAGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAGATATCCCATGACGTGATCATAGACACAGCAGTGTTGTACAGACACCCCCGAGGAGCATCTCATAAAAAAGCTCTAAGGTTTCTTACTAAGAAATTTCTCGCAAGGGAGATACAACAATCAGAGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCGTCCTTTACAAAGAAAAAGTTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCATCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACACTCATACCTGAAGAAGAAGGCTGAAGATTCTGATAGCTTGAATGAAAGACTTGCAGAGATGATGGCATTGCAAACATGTCAGAAAAATTCTGATCAACAGAAAGGCTTCAAGTTGAAAGCACCTGCTGAGCTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAATCTCTATTTGTCATTACCCACAAATGCTATGATGATAATTTTTACTGGACACGGAGACACTGCCATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGACTGAGTCTAATTTATGTCGTGAAAAGATTGTGGACATTTTGGCAGAATTTCAGGCTCAAGCTGAAGTAGCATTGTGTTTTGTAGGCGTAAAGCATTGA 1467 0.4056 MLYMPGLDAALFLSLSKMLRNIKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENSSLMRKPALTSHQEEGCRDTDSLSFTELTKDIPFPVTYYTLTEKELEENGYSFNQPGFLSTLPAPSGSPFYEMLALDCEMCITSEGFELTRISLVDVKGQVLIDRLVKPSNAITDYNTRFSGITPEMLDGVTTSLRDIQELFLEFVYKETILVGHSLENDLLALKISHDVIIDTAVLYRHPRGASHKKALRFLTKKFLAREIQQSENGHDSIEDARATLELALLKIRNGPDFGSPPSFTKKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKKAEDSDSLNERLAEMMALQTCQKNSDQQKGFKLKAPAELKEILARMDARIHNLYLSLPTNAMMIIFTGHGDTAIVRRLRRMLAEQTESNLCREKIVDILAEFQAQAEVALCFVGVKH* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00888 488 CDD REX1_like 134 283 IPR034922 -
Phac1g00888 488 SMART exoiiiendus 132 291 IPR013520 -
Phac1g00888 488 FunFam RNA exonuclease NEF-sp 130 293 - -
Phac1g00888 488 Gene3D - 131 291 IPR036397 GO:0003676
Phac1g00888 488 Pfam Exonuclease 135 281 IPR013520 -
Phac1g00888 488 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 296 IPR047021 GO:0004527
Phac1g00888 488 SUPERFAMILY Ribonuclease H-like 133 286 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00888 Phac-Chr1 7679307 7689525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00888 133 281 C2H2 Transcription Factor Family AT3G27970 29.341 4.66e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00888 K14570 - gmx:100802793 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g00888 1 7679307 7689525 Phac1g00888 1 7679307 7689525 ECH