Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00887 ATGCCCCAAGTAGAAGCCGCAGAGAGAATGACTTCCCCTGAAGCCTTCCTCAGCGTTGAAGAAGATGATTCTACTGCTAACAAAAAGCGCGGCTTGTTCTACGATGTTTATGGACCCGAAGGCAAGGCAGATGTTGTTTTCAATTCTCCAGAAGATAATTCAATTCTTGATCTAAAGGATATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGGTTTTCATTAAGAATAAACCTCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCTTTGTTCTTGTCGCTGTCTAAAATGCTTCGTAATATAAAAAAAATCTGTGGCAAACCAAGGCCTGTCCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAACAGTTCACTTATGAGGAAACCTGCTCTTACATCTCATCAAGAAGAAGGTTGTCGTGATACAGACAGTCTATCATTTACTGAGCTTACTAAAGACATACCTTTCCCTGTTACATACTATACACTAACTGAGAAAGAGCTGGAAGAGAATGGATATTCTTTTAATCAACCAGGTTTTCTTTCTACTTTGCCTGCACCTTCAGGATCTCCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAAGGTTTTGAGCTCACAAGAATTAGTCTAGTGGATGTCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCACTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAACTGTTCCTAGAGTTTGTTTACAAGGAGACTATCCTTGTAGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAGATATCCCATGACGTGATCATAGACACAGCAGTGTTGTACAGACACCCCCGAGGAGCATCTCATAAAAAAGCTCTAAGGTTTCTTACTAAGAAATTTCTCGCAAGGGAGATACAACAATCAGAGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCGTCCTTTACAAAGAAAAAGTTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCATCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTGAAGAATGACAAGGTACATTTTATCTGGACACAGTTTTCGGAGCTACACTCATACCTGAAGAAGAAGGCTGAAGATTCTGATAGCTTGAATGAAAGACTTGCAGAGATGATGGCATTGCAAACATGTCAGAAAAATTCTGATCAACAGAAAGGCTTCAAGTTGAAAGCACCTGCTGAGCTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAATCTCTATTTGTCATTACCCACAAATGCTATGATGATAATTTTTACTGGACACGGAGACACTGCCATTGTCCGCAGGTTGAGGAGAATGCTTGCAGAGCAGACTGAGTCTAATTTATGTCGTGAAAAGATTGTGGACATTTTGGCAGAATTTCAGGCTCAAGCTGAAGTAGCATTGTGTTTTGTAGGCGTAAAGCATTGA 1737 0.4082 MPQVEAAERMTSPEAFLSVEEDDSTANKKRGLFYDVYGPEGKADVVFNSPEDNSILDLKDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLRNIKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENSSLMRKPALTSHQEEGCRDTDSLSFTELTKDIPFPVTYYTLTEKELEENGYSFNQPGFLSTLPAPSGSPFYEMLALDCEMCITSEGFELTRISLVDVKGQVLIDRLVKPSNAITDYNTRFSGITPEMLDGVTTSLRDIQELFLEFVYKETILVGHSLENDLLALKISHDVIIDTAVLYRHPRGASHKKALRFLTKKFLAREIQQSENGHDSIEDARATLELALLKIRNGPDFGSPPSFTKKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKKAEDSDSLNERLAEMMALQTCQKNSDQQKGFKLKAPAELKEILARMDARIHNLYLSLPTNAMMIIFTGHGDTAIVRRLRRMLAEQTESNLCREKIVDILAEFQAQAEVALCFVGVKH* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00887 578 SUPERFAMILY Ribonuclease H-like 223 376 IPR012337 -
Phac1g00887 578 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 387 IPR047021 GO:0004527
Phac1g00887 578 SMART exoiiiendus 222 381 IPR013520 -
Phac1g00887 578 CDD REX1_like 224 373 IPR034922 -
Phac1g00887 578 Gene3D - 221 381 IPR036397 GO:0003676
Phac1g00887 578 FunFam RNA exonuclease NEF-sp 220 383 - -
Phac1g00887 578 Pfam Exonuclease 225 371 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00887 Phac-Chr1 7679307 7689525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00887 216 371 C2H2 Transcription Factor Family AT3G27970 29.885 8.74e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00887 K14570 - gmx:100802793 956.051