Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00876 ATGAGCACTGCACAAGAGAAGGTTGTTAGGTTTAGGGATTGCAATTTGGAGAAGAGTTCTGAGAGAAATTATTCTGAGATTAAAATTGCACACTCAGGGATATTTAGAACGACATTAAGTTCAGTTTCTGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGATAGGATAAAAAACTTCAGAACATCATTCAAATCTTTTCCCTATAGTAGTGCTCTTTCTAGAAGTTTTAGTTCTAGAAAGAAAATACTTGATCCGCAGGGTCCATTCCTTCAAAGGTGGAACAAGATATTTGTATTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTTATTGATGATGAGAAAAAATGTCTTTCACTGGACAGTAAGATGGAGATTACCGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAATCCACATGATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCTCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGGGTCATTCCATTATATAGGGAAGTTACAAGAGCCTCCGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACAACATGTTGGCAAGAAGCCTGTCGAAGTAATACAACAGTGTGTAACAAGGCAGATATGTATTGTAATGATTATTGGGGTGGGCTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATACAGAACGAAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCCGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATATGCTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTGTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTGAAGAGGAGGGATGCAGAACAGTGGATGTCTCACCGATTGCTTCCTGATGGCCTGAGAGTGCGAATCAGACGATATGAGCAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGTAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGACATCTTTGTTTGGCTTTGCTAATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTGAAGCCGGTGCTTTTCACTGAAGAAAGCTACATTGTGAGGGAAGGAGACCCAGTTGATGAGATGCTGTTCATAATGCGTGGGAAGTTATTGACCATAACAACTAACGGTGGAAGAACCGGTTTCTTCAACTCCGAGTATCTGAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTGACGTGGGCCTTGGATCCCCATTCTTCATCCAACCTTCCCACCTCAACCAGAACAGTCCAAACTCTTTCAGAAGTGGAAGCCTTCGCCCTCAAAGCTGATGACTTGAAGTTCGTGGCATCACAGTTTCGGCGCCTTCACAGCAAGCAGCTACGCCACACTTTCAGGTTCTACTCGCAACAATGGCGGTCGTGGGCTGCGTGTTTCATTCAAGCTGCATGGCGGCGATACAGTAAGAGGAAGCTTGAAGAATCCCTGGTTGAAGACGAGAATAGACTGCAAAATGTGTTGGCTAAATCAGGTGGAAGCTCACCTAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTACATTGCTACGCCGTAATGGTGCAAAGAAGGGTAGGGTGGCAGCAGAGAGATTACCCCCCATGCTTTTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAAGAATAA 2157 0.4163 MSTAQEKVVRFRDCNLEKSSERNYSEIKIAHSGIFRTTLSSVSEKFQNGLESGSDRIKNFRTSFKSFPYSSALSRSFSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSKMEITATVLRSFSDAFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRVIPLYREVTRASGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGLSKISTFLNTSCPIQNEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKRKLEESLVEDENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRVAAERLPPMLFQKPAEPDFTADEE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00876 718 Coils Coil 640 660 - -
Phac1g00876 718 CDD CAP_ED 488 619 IPR000595 -
Phac1g00876 718 SMART cnmp_10 488 619 IPR000595 -
Phac1g00876 718 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Phac1g00876 718 Pfam Ion transport protein 93 415 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac1g00876 718 Pfam Cyclic nucleotide-binding domain 509 599 IPR000595 -
Phac1g00876 718 Gene3D - 94 412 - -
Phac1g00876 718 Gene3D Jelly Rolls 486 606 IPR014710 -
Phac1g00876 718 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Phac1g00876 718 Gene3D Helix hairpin bin 414 479 - -
Phac1g00876 718 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Phac1g00876 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 713 - -
Phac1g00876 718 SUPERFAMILY cAMP-binding domain-like 417 610 IPR018490 -
Phac1g00876 718 SUPERFAMILY Voltage-gated potassium channels 85 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00876 Phac-Chr1 7553567 7561065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00876 1 717 Ion Channels AT5G53130 77.051 0.0 1137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00876 K05391 - gmx:100801032 1306.97