Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00829 ATGTCTCGCGTTTATGTTGGTAACTTGGATTCACGAGTGACCGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTCATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTCGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTGGATGGTATGAAGGGTTACGATTGTTTGATGTAA 207 0.4396 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGMKGYDCLM* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00829 68 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 64 IPR000504 GO:0003723
Phac1g00829 68 SMART rrm1_1 3 68 IPR000504 GO:0003723
Phac1g00829 68 SUPERFAMILY RNA-binding domain, RBD 3 62 IPR035979 GO:0003676
Phac1g00829 68 Gene3D - 2 66 IPR012677 -
Phac1g00829 68 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 64 - -
Phac1g00829 68 FunFam Serine/arginine-rich splicing factor 7 2 67 - -
Phac1g00829 68 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 68 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00829 Phac-Chr1 7033252 7037158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00829 2 67 Eukaryotic Initiation Factors Gene Family AT2G36660 39.437 9.02e-09 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00829 K12896 - gmx:100796961 127.487