Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00828 ATGTCTCGCGTTTATGTTGGTAACTTGGATTCACGAGTGACCGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTCATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTCGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTGGATGGGTTTTCCTCAACTAGCTAG 198 0.4545 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGFSSTS* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00828 65 SMART rrm1_1 3 65 IPR000504 GO:0003723
Phac1g00828 65 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Phac1g00828 65 SUPERFAMILY RNA-binding domain, RBD 3 61 IPR035979 GO:0003676
Phac1g00828 65 FunFam Serine/arginine-rich splicing factor 7 2 64 - -
Phac1g00828 65 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 61 - -
Phac1g00828 65 Gene3D - 2 64 IPR012677 -
Phac1g00828 65 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 65 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00828 Phac-Chr1 7033252 7037158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00828 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 2.09e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00828 K12896 - gmx:100796961 124.79