Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00813 ATGCAAAAAGACAAAGAAATTGTTAGCAAAGAGGGTAAAGATATTGAAATGGAAGGGACTCATGATGAGAAGAAGGAGGAAACCCTACCACCTGGATTTCGGTTTCACCCCACCGATGAAGAACTCATTTCTTACTACCTCACAAACAAGATTTCAGATTCTAATTTCACAGGAAAAGCCATAGCTGTTGTAGATCTCAACAAATGTGAACCATGGGATCTTCCGGGGAAGGCGAAGATGGGGCAAAAAGAATGGTACTTCTTCAACCTAAGGGATCGTAAGTATCCGACAGGTGTGAGAACGAATAGAGCAACGAAGACAGGGTACTGGAAAACCACAGGGAAAGACAAGGAGATATTGAACAGTGTTACATCGGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAAATCGATAAGCAAGATGAATGGGTGGTTTGCCGGGTGTTCCGGAAGAGTGGTGGAGCAAGAAAGTTGCCATCAAATTCCAACCACACCAACACCAGAACACTCAATCCTTACAGTGTGGAAGTTGGCCCTAGCATTGTGCCACCCCCAATGATGCACCTGGGAGATCCTTCTGCTCATTTCAATTTTCCTTATGGATCAAGAAACCCTTCAGAGCTCTTCAGAGCTGGTGGATCCACAAGTGCCAATCTCATGAACCTCCCAATAATGCACCCCCATTTCAACAATGCAGCAGCAGCAGCAGAAGGTTTCACCATTTCTGGCCTCAATTTGAACCTGGGGGGTGCCACCACACAAACACAAACACAACCCTTTTTGAGGCCAATGATGCCACCACCACAGCCACTTTCTGTGGCCCAACTCAACCATGATTTCAGTTCCAACATGGTGACACACACTGCTCTTGCTGCTCACAGTGTAGGGTATGCTGCAGACATGGCCAATGCAAATTCTCACGGCAATAGGTACATTGGCATGGACCACTGCATGGATCTAGACAATTACTGGCCTTCCTACTAA 1065 0.4582 MQKDKEIVSKEGKDIEMEGTHDEKKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATKTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKIDKQDEWVVCRVFRKSGGARKLPSNSNHTNTRTLNPYSVEVGPSIVPPPMMHLGDPSAHFNFPYGSRNPSELFRAGGSTSANLMNLPIMHPHFNNAAAAAEGFTISGLNLNLGGATTQTQTQPFLRPMMPPPQPLSVAQLNHDFSSNMVTHTALAAHSVGYAADMANANSHGNRYIGMDHCMDLDNYWPSY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00813 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 254 - -
Phac1g00813 354 Gene3D NAC domain 38 181 IPR036093 GO:0003677|GO:0006355
Phac1g00813 354 FunFam NAC domain-containing protein 100-like 38 182 - -
Phac1g00813 354 MobiDBLite consensus disorder prediction 1 33 - -
Phac1g00813 354 Pfam No apical meristem (NAM) protein 30 156 IPR003441 GO:0003677|GO:0006355
Phac1g00813 354 ProSiteProfiles NAC domain profile. 29 178 IPR003441 GO:0003677|GO:0006355
Phac1g00813 354 SUPERFAMILY NAC domain 25 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00813 Phac-Chr1 6884531 6887950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00813 18 354 NAC Transcription Factor Family AT2G24430 51.240 1.59e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac1g00813 NAM 3.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00813 - - pvu:PHAVU_001G059900g 653.669