Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00806 ATGGAAGAGTATTCTGGTCGAAGAGGCGTGGATGGGGTGGTAGTCCCTAGAAAGGGGATGAGCCATGTACTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGAGCTGCAGTAGTAGAGCTAATATTCCTAAATTTTCTCCAGTCAGATCTTCTGAAAAGGGTAAATCTCCGAGGCCTTTATCCCAGTCCTCTTCAAGTAGCAAGGAACCAATTGGAAGTTCCTCTAGATCTACTAGTAACCCAGAAAAACGAATTATGGAACCTCGGAAAATATTATCCTCTCAGTTTGAGGCAGATTCATCTGAAAGTAGTAGTGTACAGGATGAACAAGAATTTTCAGAGCTCATTCCTCCAGCAGAAGAAAATCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTTATGCGAGTCTGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCCAAGGAATTTAAATCAAAGACCTGGACTTCGTGGACAAGAAATCAAAAGCAGTGGTCCAGTGAGACATGCTGTTTCAAGCAGTTATGGATTGAGGAACATCAGATGCAACACTATATCTGATATCACCCAACCTGGTTGTTCATCATCAGATTCAAGTCTTAATAGAAGGAAGGATACAATAAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATCATTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAGGAAGAACAAGAAATACGCCTTCTCACCGGAATACCAGTATGACACCAGTAAGAACTCAAAGATCAGCTAGTGGTCATGCCAGGGGAAGGTTTTATAGCCAAGGAAATGAAAATCCTTTGGCAACCAGTGAGTTCCCTCATTCTGATGATGTTAATCCTCATGGCATTTCGTGTCATATTTCTATGGAGACTCCTTTAACATGCTCAAGCTCTAGTGGTAGACCAGGCAATAGCAGTGAGCAGTTACCTTGTGTCACGCCTCTGTCTCCTGAAGATGACATCATTCATTCTCTAACAAATGATGGGGACGGATTTCGACTTTACAATATGGACAGTATTGATGGGATATTATTGGCCCTTGAGAGGATTCAACAAGGTCGAGAGCTAACCCATGAGCAAATTCTTTTGTTTGGGACCAACTTGTTCGATAATGGATTAAACTTTTATGACCACCACAGAGACATGCGGTTGGATATTGATGACATGTCCTATGAGGAACTCTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGATACAGATGAGAACTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGTGATGAACTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGTTTGCATAGAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCAGCACTGTCTAATAATTCATCTTCACCTCATTGA 1596 0.4236 MEEYSGRRGVDGVVVPRKGMSHVLRDTANTRERTGQVCSKLSCSSRANIPKFSPVRSSEKGKSPRPLSQSSSSSKEPIGSSSRSTSNPEKRIMEPRKILSSQFEADSSESSSVQDEQEFSELIPPAEENQRGPKSRGGSSESSYASLMEVGSSSTVSNTRSPRNLNQRPGLRGQEIKSSGPVRHAVSSSYGLRNIRCNTISDITQPGCSSSDSSLNRRKDTIKKRNCEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSGRTRNTPSHRNTSMTPVRTQRSASGHARGRFYSQGNENPLATSEFPHSDDVNPHGISCHISMETPLTCSSSSGRPGNSSEQLPCVTPLSPEDDIIHSLTNDGDGFRLYNMDSIDGILLALERIQQGRELTHEQILLFGTNLFDNGLNFYDHHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTDENCNEDKDDIKCCICQEEYVVGDELGDLPCKHRFHVVCIEEWMGLKNWCPICKLSAALSNNSSSPH* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00806 531 MobiDBLite consensus disorder prediction 232 306 - -
Phac1g00806 531 MobiDBLite consensus disorder prediction 216 231 - -
Phac1g00806 531 SUPERFAMILY RING/U-box 471 521 - -
Phac1g00806 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 69 521 IPR045191 GO:0061630
Phac1g00806 531 MobiDBLite consensus disorder prediction 30 52 - -
Phac1g00806 531 MobiDBLite consensus disorder prediction 133 173 - -
Phac1g00806 531 MobiDBLite consensus disorder prediction 62 88 - -
Phac1g00806 531 Pfam Ring finger domain 476 518 IPR001841 -
Phac1g00806 531 MobiDBLite consensus disorder prediction 206 319 - -
Phac1g00806 531 ProSiteProfiles Zinc finger RING-type profile. 477 518 IPR001841 -
Phac1g00806 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 522 IPR013083 -
Phac1g00806 531 FunFam E3 ubiquitin-protein ligase arkadia 439 523 - -
Phac1g00806 531 MobiDBLite consensus disorder prediction 1 183 - -
Phac1g00806 531 MobiDBLite consensus disorder prediction 101 118 - -
Phac1g00806 531 SMART ring_2 477 517 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00806 Phac-Chr1 6762287 6767806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac1g00806 355 521 C3H Transcription Factor Family AT2G15530 44.379 2.57e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00806 - - vum:124824270 808.905