Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac1g00794 | ATGTTCTCCAGCTCCCAATTCGATGCAGCCACAGCCTTCTCCGGCGGTGGATTCATGTCCTCTCAGCCGTCTAACCCCAACGATTCCTCTCCCGCATCGTCAAAAAGCCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATAAGTGAAGCCTCTCAAACCGGTGACGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATGTAACACTAGTCGGGATGGTGTTTGAGAAAGTTGAGCGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACAAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTCCGTGTTTTTGGGCATTTGAAAAGCTTCCAAGGTGTTAGGCAACTTGTTGCTTTCTCTGTCAGGCCCGTTACCAATTTTGATGAGATCCCTTTTCACTTTATTGATAGCATATATTACCATCTTCGCTCCAAAATGAAGTTGGAAGGAATCACTTCTACAAATCCTTTATATGTCTCGTCTTTTAACACTCCTGTCAAAAATGCCCCAAATGGATCTCAGGCGCCACCATCAAATCCGGCATATGCACAATATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTGTTGACTACCTGAAGCAGCATTCAGATATGTCAGATGAACGTGGAATACATGTCAATGAATTATCCCGAGAGCTCAAGCTTCCAATGGATAGGATCATGTTGTCGCTGAAGACTCTTGTAGACGATGGTTTAGTATACTCCACCATTGATGACGACCATTACAAACAAGTTTGA | 834 | 0.4376 | MFSSSQFDAATAFSGGGFMSSQPSNPNDSSPASSKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDSIYYHLRSKMKLEGITSTNPLYVSSFNTPVKNAPNGSQAPPSNPAYAQYSVDGLKDCDKLIVDYLKQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLVDDGLVYSTIDDDHYKQV* | 278 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac1g00794 | 277 | FunFam | Replication protein A 32 kDa subunit | 208 | 277 | - | - | |
| Phac1g00794 | 277 | MobiDBLite | consensus disorder prediction | 14 | 41 | - | - | |
| Phac1g00794 | 277 | CDD | RPA2_DBD_D | 72 | 165 | - | - | |
| Phac1g00794 | 277 | PANTHER | REPLICATION PROTEIN A-RELATED | 6 | 275 | IPR040260 | - | |
| Phac1g00794 | 277 | Pfam | Replication protein A C terminal | 191 | 272 | IPR014892 | - | |
| Phac1g00794 | 277 | Pfam | OB-fold nucleic acid binding domain | 73 | 145 | IPR004365 | GO:0003676 | |
| Phac1g00794 | 277 | FunFam | replication protein A 32 kDa subunit A-like | 35 | 169 | - | - | |
| Phac1g00794 | 277 | Gene3D | - | 207 | 277 | IPR036388 | - | |
| Phac1g00794 | 277 | SUPERFAMILY | "Winged helix" DNA-binding domain | 211 | 277 | IPR036390 | - | |
| Phac1g00794 | 277 | SUPERFAMILY | Nucleic acid-binding proteins | 42 | 166 | IPR012340 | - | |
| Phac1g00794 | 277 | PIRSF | RPA32 | 1 | 277 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Phac1g00794 | 277 | Gene3D | - | 38 | 169 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac1g00794 | Phac-Chr1 | 6619859 | 6624319 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac1g00794 | 1 | 277 | Core DNA Replication Machinery Family | AT2G24490 | 49.110 | 3.46e-93 | 275 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac1g00794 | K10739 | - | gmx:100802512 | 461.07 |